RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SEC24AO95486 1093 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 IGFBP6P24592 240 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-210ENST00000597618 BRCC3P46736 316 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 EPHA5P54756 1037 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 TOB2Q14106 344 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-210ENST00000597618 STPG1Q5TH74 334 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 MAEAQ7L5Y9 396 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 CACNA2D4Q7Z3S7 1137 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 SYNPOQ8N3V7 929 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 DEPTORQ8TB45 409 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 ZNF274Q96GC6 653 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-210ENST00000597618 CCDC113Q9H0I3 377 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 ARRDC1-AS1Q9H2J1 176 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 GOLGA2P5Q9HBQ8 144 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 SLC38A7Q9NVC3 462 aa11.14□□□□□ -0.63
TRIM28-210ENST00000597618 NCANO14594 1321 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 SMIM28A0A1B0GU29 152 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 MYBPHLA2RUH7 354 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 SPECC1L-ADORA2AF8WAN1 911 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 AXIN1O15169 862 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 MOSPD3O75425 235 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 KCNK5O95279 499 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 MYL4P12829 197 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 LIG1P18858 919 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 ATP2B1P20020 1258 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 CTHP32929 405 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 NAMPTP43490 491 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 RAP1GAPP47736 663 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 FCHO2Q0JRZ9 810 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 TWF1Q12792 350 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 ACAP1Q15027 740 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 TEAD2Q15562 447 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 CALCRLQ16602 461 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 EEF1DP3Q658K8 133 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 ZNF280DQ6N043 979 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 UNQ6494/PRO21346Q6UXR6 183 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 RUFY3Q7L099 469 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 RALGPS2Q86X27 583 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-210ENST00000597618 HS6ST3Q8IZP7 471 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 OXER1Q8TDS5 423 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 GAB3Q8WWW8 586 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 LSM14BQ9BX40 385 aaKnown RBP11.13□□□□□ -0.63
TRIM28-210ENST00000597618 TTC12Q9H892 705 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-210ENST00000597618 TOPORSQ9NS56 1045 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-210ENST00000597618 RXFP3Q9NSD7 469 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 CEP72Q9P209 647 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 AFF4Q9UHB7 1163 aaKnown RBP11.13□□□□□ -0.63
TRIM28-210ENST00000597618 FBXL5Q9UKA1 691 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 PCDHGA5Q9Y5G8 931 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 WDFY3Q8IZQ1 3526 aa11.13□□□□□ -0.63
TRIM28-210ENST00000597618 STK36Q9NRP7 1315 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 CCDC163A0A0D9SF12 145 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 PODXLO00592 558 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 RPP40O75818 363 aaKnown RBP11.12□□□□□ -0.63
TRIM28-210ENST00000597618 AKAP3O75969 853 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 EDN1P05305 212 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 GJA1P17302 382 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 SOX9P48436 509 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 EFNA5P52803 228 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 YARSP54577 528 aaKnown RBP11.12□□□□□ -0.63
TRIM28-210ENST00000597618 STK3Q13188 491 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 CCINQ13939 588 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 MRPL58Q14197 206 aaKnown RBP11.12□□□□□ -0.63
TRIM28-210ENST00000597618 PPP2R5AQ15172 486 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 CCDC6Q16204 474 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 CTXN3Q4LDR2 81 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 WDR44Q5JSH3 913 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 PLA2G2CQ5R387 149 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 ATF7IP2Q5U623 682 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 HAUS6Q7Z4H7 955 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 SHKBP1Q8TBC3 707 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 BSNDQ8WZ55 320 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 C2orf42Q9NWW7 574 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 ZMIZ1Q9ULJ6 1067 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 USP20Q9Y2K6 914 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 NUB1Q9Y5A7 615 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 RALGAPA1Q6GYQ0 2036 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 SDK1Q7Z5N4 2213 aa11.12□□□□□ -0.63
TRIM28-210ENST00000597618 A0A087WWV3 80 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 C1QTNF9BB2RNN3 333 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 NEMFO60524 1076 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 C1QTNF9P0C862 333 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 CCDC192P0DO97 292 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 CPB1P15086 417 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 MPLP40238 635 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 TXKP42681 527 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 SOX4Q06945 474 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-210ENST00000597618 PLD1Q13393 1074 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 PON2Q15165 354 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 ARHGAP29Q52LW3 1261 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 XKR4Q5GH76 650 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 EARS2Q5JPH6 523 aaKnown RBP11.11□□□□□ -0.63
TRIM28-210ENST00000597618 RNF43Q68DV7 783 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 PSAPL1Q6NUJ1 521 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 TXNDC11Q6PKC3 985 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 KBTBD6Q86V97 674 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 KDF1Q8NAX2 398 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-210ENST00000597618 APPL2Q8NEU8 664 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 RSPRY1Q96DX4 576 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 CCDC94Q9BW85 323 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms