RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PPANQ9NQ55 473 aaKnown RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 VAV3Q9UKW4 847 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ITGA11Q9UKX5 1188 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 MYH14Q7Z406 1995 aaKnown RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 MIF4GDA9UHW6 222 aaKnown RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 SELPP16109 830 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 LHX1P48742 406 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 PTENP60484 403 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 RPL10AP62906 217 aaKnown RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 ITIH3Q06033 890 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 NME3Q13232 169 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 PKN2Q16513 984 aaKnown RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 ARHGAP15Q53QZ3 475 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 TTI2Q6NXR4 508 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ANO5Q75V66 913 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 BBOF1Q8ND07 529 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 EXOC4Q96A65 974 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 GAD1Q99259 594 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 SGIP1Q9BQI5 828 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 PARVAQ9NVD7 372 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 TNFSF13BQ9Y275 285 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 FHOD1Q9Y613 1164 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 NID2Q14112 1375 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 SMIM23A6NLE4 172 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 PFDN6O15212 129 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 BNIP3LO60238 219 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 RECQL4O94761 1208 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ZRANB2O95218 330 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIG3-216ENST00000593099 CYBBP04839 570 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 CD52P31358 61 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 RTP1P59025 263 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 CACNB2Q08289 660 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 C10orf67Q8IYJ2 551 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ZNF564Q8TBZ8 553 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 ZNF296Q8WUU4 475 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 RBM41Q96IZ5 413 aaKnown RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 SEMA6BQ9H3T3 888 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 CYP3A43Q9HB55 503 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 HOMER3Q9NSC5 361 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ST3GAL5Q9UNP4 418 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 KRT3P12035 628 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 UGCGQ16739 394 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 CYP4A22Q5TCH4 519 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 TAOK1Q7L7X3 1001 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 ADGRF2Q8IZF7 708 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 LENG1Q96BZ8 264 aaPredicted RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 NUP85Q9BW27 656 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 INTS13Q9NVM9 706 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 HPCAL4Q9UM19 191 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 SGK1O00141 431 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 KRT7P08729 469 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 SSTR3P32745 418 aaPredicted RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 CLCN1P35523 988 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 CAPSQ13938 189 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 LLGL1Q15334 1064 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 LGSNQ5TDP6 509 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 DARS2Q6PI48 645 aaKnown RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 KIAA0319LQ8IZA0 1049 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 GANCQ8TET4 914 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 HASPINQ8TF76 798 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 PBKQ96KB5 322 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 SIK2Q9H0K1 926 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 TJP2Q9UDY2 1190 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 TRAF3IP3Q9Y228 551 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 JRKLQ9Y4A0 524 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 PASKQ96RG2 1323 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 PGRMC1O00264 195 aaKnown RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 RTN2O75298 545 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 AKAP3O75969 853 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 SPATA31C1P0DKV0 1188 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 COG7P83436 770 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 GFPT1Q06210 699 aaPredicted RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 AMHR2Q16671 573 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 KLHDC7AQ5VTJ3 777 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 RUFY4Q6ZNE9 571 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 SAMD15Q9P1V8 674 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 PCSK1NQ9UHG2 260 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 ATF2P15336 505 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 DNAJB2P25686 324 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 CLK2P49760 499 aaKnown RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 NAA25Q14CX7 972 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 GOLGA7BQ2TAP0 167 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 TDRD10Q5VZ19 366 aaKnown RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 SV2AQ7L0J3 742 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 ZNF677Q86XU0 584 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 EFCAB13Q8IY85 973 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 NPLOC4Q8TAT6 608 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 ZBTB45Q96K62 511 aaPredicted RBP10.42□□□□□ -0.74
LIG3-216ENST00000593099 USP20Q9Y2K6 914 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 Q9Y3F1 56 aa10.42□□□□□ -0.74
LIG3-216ENST00000593099 UMODL1Q5DID0 1318 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 CD44P16070 742 aaKnown RBP10.41□□□□□ -0.74
LIG3-216ENST00000593099 ACLYP53396 1101 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 EPHB1P54762 984 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 E2F4Q16254 413 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 OVOS1Q6IE37 1185 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ARHGAP18Q8N392 663 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 KIAA0895Q8NCT3 520 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 PPP1R13BQ96KQ4 1090 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ZNF558Q96NG5 402 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms