RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 RSPO2Q6UXX9 243 aaPredicted RBP21.86■■□□□ 1.09
NUP88-204ENST00000572290 GLIS3Q8NEA6 775 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 FAM213AQ9BRX8 229 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 RHOBTB2Q9BYZ6 727 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 C2CD2Q9Y426 696 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 PVALEFA0A1B0GWK0 134 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 H7C4K7 107 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 ACTN4O43707 911 aaKnown RBP21.85■■□□□ 1.09
NUP88-204ENST00000572290 ZMYND10O75800 440 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 CUL4BQ13620 913 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 LIN9Q5TKA1 542 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 CCDC149Q6ZUS6 474 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 APPL2Q8NEU8 664 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 SMG7Q92540 1137 aaKnown RBP21.85■■□□□ 1.09
NUP88-204ENST00000572290 ZNF707Q96C28 371 aaPredicted RBP21.85■■□□□ 1.09
NUP88-204ENST00000572290 SAAL1Q96ER3 474 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 CBWD1Q9BRT8 395 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 PCDHB8Q9UN66 801 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 HPSEQ9Y251 543 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 USTQ9Y2C2 406 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 MYH11P35749 1972 aa21.85■■□□□ 1.09
NUP88-204ENST00000572290 C2CD4DB7Z1M9 353 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 EIF3DO15371 548 aaKnown RBP eCLIP21.84■■□□□ 1.09
NUP88-204ENST00000572290 IL18RAPO95256 599 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 PAPLNO95428 1278 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 NUCB2P80303 420 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 EHHADHQ08426 723 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 MRPL58Q14197 206 aaKnown RBP21.84■■□□□ 1.09
NUP88-204ENST00000572290 ARMCX5Q6P1M9 558 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 EPM2AIP1Q7L775 607 aaPredicted RBP21.84■■□□□ 1.09
NUP88-204ENST00000572290 GRAMD1CQ8IYS0 662 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 PRKD2Q9BZL6 878 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 PCIF1Q9H4Z3 704 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 PIDD1Q9HB75 910 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 USP25Q9UHP3 1055 aa21.84■■□□□ 1.09
NUP88-204ENST00000572290 BDP1A6H8Y1 2624 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 M0QZQ0 153 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 EXTL3O43909 919 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 TBC1D4O60343 1298 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 C8AP07357 584 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 AARSP49588 968 aaKnown RBP eCLIP21.83■■□□□ 1.09
NUP88-204ENST00000572290 TMEM31Q5JXX7 168 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 SLC8B1Q6J4K2 584 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 ZNF280DQ6N043 979 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 DSTYKQ6XUX3 929 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 BRSK2Q8IWQ3 736 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 TDRD5Q8NAT2 981 aaKnown RBP21.83■■□□□ 1.09
NUP88-204ENST00000572290 ZSWIM2Q8NEG5 633 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 ZNF507Q8TCN5 953 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 PAGE5Q96GU1 130 aa21.83■■□□□ 1.09
NUP88-204ENST00000572290 WDR6Q9NNW5 1121 aaKnown RBP21.83■■□□□ 1.09
NUP88-204ENST00000572290 FAM237AA0A1B0GTK4 181 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 GOLGA8IPA6NC78 632 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 GOLGA8JA6NMD2 632 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 TULP1O00294 542 aaPredicted RBP21.82■■□□□ 1.08
NUP88-204ENST00000572290 PPEF2O14830 753 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 KIAA0391O15091 583 aaKnown RBP21.82■■□□□ 1.08
NUP88-204ENST00000572290 GPR37L1O60883 481 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 PAX3P23760 479 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 SYKP43405 635 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 ROR1Q01973 937 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 CTXN3Q4LDR2 81 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 PPM1LQ5SGD2 360 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 C9orf57Q5W0N0 161 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 NT5DC4Q86YG4 428 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 EFCAB13Q8IY85 973 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 PLCD3Q8N3E9 789 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 NOC3LQ8WTT2 800 aaKnown RBP21.82■■□□□ 1.08
NUP88-204ENST00000572290 ACSF2Q96CM8 615 aaPredicted RBP21.82■■□□□ 1.08
NUP88-204ENST00000572290 RBAKQ9NYW8 714 aaPredicted RBP21.82■■□□□ 1.08
NUP88-204ENST00000572290 FBXL5Q9UKA1 691 aa21.82■■□□□ 1.08
NUP88-204ENST00000572290 UBE4BO95155 1302 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 A0A1W2PQ27 194 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 A0A1W2PQ64 194 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 A0A1W2PQD8 194 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 ANO9A1A5B4 782 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 FAM86C2PA6NEL3 165 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 PIRO00625 290 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 HNRNPA1P09651 372 aaKnown RBP eCLIP21.81■■□□□ 1.08
NUP88-204ENST00000572290 HOXD13P35453 343 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 ARPP19P56211 112 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 LILRA4P59901 499 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 UVSSAQ2YD98 709 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 OTOP3Q7RTS5 596 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 ZDHHC14Q8IZN3 488 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 GPD1LQ8N335 351 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 SLC7A14Q8TBB6 771 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 SCFD1Q8WVM8 642 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 GDPD2Q9HCC8 539 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 SLC39A2Q9NP94 309 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 C11orf16Q9NQ32 467 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 DPP3Q9NY33 737 aa21.81■■□□□ 1.08
NUP88-204ENST00000572290 TIMM13Q9Y5L4 95 aaPredicted RBP21.81■■□□□ 1.08
NUP88-204ENST00000572290 CLUHO75153 1309 aa21.8■■□□□ 1.08
NUP88-204ENST00000572290 HOXA9P31269 272 aa21.8■■□□□ 1.08
NUP88-204ENST00000572290 NDUFA8P51970 172 aa21.8■■□□□ 1.08
NUP88-204ENST00000572290 YWHAHQ04917 246 aaPredicted RBP21.8■■□□□ 1.08
NUP88-204ENST00000572290 RTL10Q7L3V2 364 aa21.8■■□□□ 1.08
NUP88-204ENST00000572290 USP37Q86T82 979 aa21.8■■□□□ 1.08
NUP88-204ENST00000572290 NELFCDQ8IXH7 590 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms