RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CORO1BQ9BR76 489 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 BCO2Q9BYV7 579 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 LTB4R2Q9NPC1 389 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 KCND2Q9NZV8 630 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 TUBGCP4Q9UGJ1 667 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 MTF2Q9Y483 593 aaPredicted RBP16.3■□□□□ 0.2
CLN3-236ENST00000568558 INSL5Q9Y5Q6 135 aa16.3■□□□□ 0.2
CLN3-236ENST00000568558 NUP210Q8TEM1 1887 aaPredicted RBP16.29■□□□□ 0.2
CLN3-236ENST00000568558 VWA3AA6NCI4 1184 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 CLDN3O15551 220 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 CD72P21854 359 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 FOXK2Q01167 660 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 MCL1Q07820 350 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 CTXN3Q4LDR2 81 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 TANGO2Q6ICL3 276 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 ELSPBP1Q96BH3 223 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 TCEAL4Q96EI5 215 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 TBC1D32Q96NH3 1257 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 PLIN2Q99541 437 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 HAPLN2Q9GZV7 340 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 AFF4Q9UHB7 1163 aaKnown RBP16.29■□□□□ 0.2
CLN3-236ENST00000568558 PCDHB8Q9UN66 801 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 GTF3C3Q9Y5Q9 886 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 DNAH14Q0VDD8 3507 aa16.29■□□□□ 0.2
CLN3-236ENST00000568558 FRYLO94915 3013 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 DMXL1Q9Y485 3027 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 FAM170BA6NMN3 283 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 MICAL2O94851 1124 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 PLA2G4BP0C869 781 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 CXCL8P10145 99 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 FCARP24071 287 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 CCR2P41597 374 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 MAGEA9P43362 315 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 ID4P47928 161 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 NCKAP1LP55160 1127 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
CLN3-236ENST00000568558 RABEP1Q15276 862 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 TMEM119Q4V9L6 283 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 ARL6IP4Q66PJ3 421 aaKnown RBP16.28■□□□□ 0.2
CLN3-236ENST00000568558 TPRG1Q6ZUI0 275 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 APPL2Q8NEU8 664 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 KCNN1Q92952 543 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 CDK5RAP3Q96JB5 506 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 SPATA6Q9NWH7 488 aaPredicted RBP16.28■□□□□ 0.2
CLN3-236ENST00000568558 FBXO4Q9UKT5 387 aa16.28■□□□□ 0.2
CLN3-236ENST00000568558 CACNA1AO00555 2505 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 NPHP3-ACAD11A0A0J9YXS1 232 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 TTC26A0AVF1 554 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 ZNF197O14709 1029 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 LAMTOR5O43504 91 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 CPB1P15086 417 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 TARSP26639 723 aaKnown RBP16.27■□□□□ 0.2
CLN3-236ENST00000568558 LRPAP1P30533 357 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 MATR3P43243 847 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLN3-236ENST00000568558 SPAG1Q07617 926 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 ADCY1Q08828 1119 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 ZNF528Q3MIS6 628 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 ARSHQ5FYA8 562 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 ZBTB41Q5SVQ8 909 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 PDZD4Q76G19 769 aaPredicted RBP16.27■□□□□ 0.2
CLN3-236ENST00000568558 TMEM130Q8N3G9 435 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 DNASE1L2Q92874 299 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 CLDN23Q96B33 292 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 PLEKHA5Q9HAU0 1116 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 HEBP1Q9NRV9 189 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 CEP72Q9P209 647 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 LARSQ9P2J5 1176 aaKnown RBP16.27■□□□□ 0.2
CLN3-236ENST00000568558 MAFFQ9ULX9 164 aa16.27■□□□□ 0.2
CLN3-236ENST00000568558 SCN1AP35498 2009 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 H0YCG3 227 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 M0QZQ0 153 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 NRG2O14511 850 aaPredicted RBP16.26■□□□□ 0.19
CLN3-236ENST00000568558 MOSPD3O75425 235 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 CLTAP09496 248 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 GJB2P29033 226 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 MARCKSP29966 332 aaPredicted RBP16.26■□□□□ 0.19
CLN3-236ENST00000568558 YWHAHQ04917 246 aaPredicted RBP16.26■□□□□ 0.19
CLN3-236ENST00000568558 TWF1Q12792 350 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 ZBTB6Q15916 424 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 FAM78AQ5JUQ0 283 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 CYP4A22Q5TCH4 519 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 RNF19BQ6ZMZ0 732 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 ERMP1Q7Z2K6 904 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 HAUS6Q7Z4H7 955 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 HS6ST3Q8IZP7 471 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 ELMOD1Q8N336 334 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 BEST2Q8NFU1 509 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 BICD1Q96G01 975 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 TMX3Q96JJ7 454 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 ZNF512Q96ME7 567 aaPredicted RBP16.26■□□□□ 0.19
CLN3-236ENST00000568558 ASB16Q96NS5 453 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 NELL2Q99435 816 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 ZFP14Q9HCL3 533 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 ODF2LQ9ULJ1 636 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 UBQLN1Q9UMX0 589 aaKnown RBP16.26■□□□□ 0.19
CLN3-236ENST00000568558 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.26■□□□□ 0.19
CLN3-236ENST00000568558 F5P12259 2224 aa16.26■□□□□ 0.19
CLN3-236ENST00000568558 SHISA7A6NL88 538 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 H3BQV1 296 aa16.25■□□□□ 0.19
CLN3-236ENST00000568558 SLC26A4O43511 780 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms