RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MYO15AQ9UKN7 3530 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 PPEF2O14830 753 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 PPP6R2O75170 966 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 OAZ2O95190 189 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 NPR3P17342 541 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 CASP5P51878 434 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 POU5F1Q01860 360 aaKnown RBP16.18■□□□□ 0.18
CLN3-213ENST00000565047 NHLH1Q02575 133 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 TCF15Q12870 199 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 LIN9Q5TKA1 542 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 CCDC73Q6ZRK6 1079 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 SLC44A3Q8N4M1 653 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 NXPE3Q969Y0 559 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 HVCN1Q96D96 273 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 MSTO1Q9BUK6 570 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 RPF1Q9H9Y2 349 aaKnown RBP16.18■□□□□ 0.18
CLN3-213ENST00000565047 OLFML3Q9NRN5 406 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 HCFC1R1Q9NWW0 138 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 DNMT3BQ9UBC3 853 aaKnown RBP16.18■□□□□ 0.18
CLN3-213ENST00000565047 PCDHB8Q9UN66 801 aa16.18■□□□□ 0.18
CLN3-213ENST00000565047 ANO9A1A5B4 782 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 PIRO00625 290 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 SPTLC2O15270 562 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 CCL16O15467 120 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 NARSO43776 548 aaKnown RBP16.17■□□□□ 0.18
CLN3-213ENST00000565047 SEC24AO95486 1093 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 VNN2O95498 520 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 ATF2P15336 505 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 FSHRP23945 695 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 GBP2P32456 591 aaPredicted RBP16.17■□□□□ 0.18
CLN3-213ENST00000565047 ACOT2P49753 483 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 PPP2R3AQ06190 1150 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 HTR4Q13639 388 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 PKP1Q13835 747 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 JADE1Q6IE81 842 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 CD302Q8IX05 232 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 ITFG1Q8TB96 612 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 KBTBD4Q9NVX7 518 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 DERAQ9Y315 318 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 NUB1Q9Y5A7 615 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.17■□□□□ 0.18
CLN3-213ENST00000565047 MYH15Q9Y2K3 1946 aa16.17■□□□□ 0.18
CLN3-213ENST00000565047 H7C4K7 107 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 NRG2O14511 850 aaPredicted RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 SPTLC1O15269 473 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 YEATS4O95619 227 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 NFICP08651 508 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 ZSCAN22P10073 491 aaPredicted RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 GAP43P17677 238 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 MCM4P33991 863 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 TXLNAP40222 546 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 MATR3P43243 847 aaKnown RBP eCLIP16.16■□□□□ 0.18
CLN3-213ENST00000565047 L1TD1Q5T7N2 865 aaKnown RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 ADALQ6DHV7 355 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 SLFN12LQ6IEE8 588 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 SHC4Q6S5L8 630 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 GET4Q7L5D6 327 aaPredicted RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 SUGP1Q8IWZ8 645 aaKnown RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 TCEAL8Q8IYN2 117 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 ZSWIM2Q8NEG5 633 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 BEST2Q8NFU1 509 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 RPP25Q9BUL9 199 aaKnown RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 ASB7Q9H672 318 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 AVENQ9NQS1 362 aaPredicted RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 CDH7Q9ULB5 785 aa16.16■□□□□ 0.18
CLN3-213ENST00000565047 ZFP37Q9Y6Q3 630 aaPredicted RBP16.16■□□□□ 0.18
CLN3-213ENST00000565047 XYLBO75191 536 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 PDIA4P13667 645 aaKnown RBP16.15■□□□□ 0.18
CLN3-213ENST00000565047 ANK1P16157 1881 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 STAT6P42226 847 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 WNT7BP56706 349 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 LILRA4P59901 499 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 STK38Q15208 465 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 SLC5A9Q2M3M2 681 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 CTXN3Q4LDR2 81 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 C9orf57Q5W0N0 161 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 TPGS2Q68CL5 300 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 CWF19L1Q69YN2 538 aaKnown RBP16.15■□□□□ 0.18
CLN3-213ENST00000565047 CNNM4Q6P4Q7 775 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 PDILTQ8N807 584 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 TMEM105Q8N8V8 129 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 APPL2Q8NEU8 664 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 FGF13Q92913 245 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 FGF14Q92915 247 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 BORCS6Q96GS4 357 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 MRPL44Q9H9J2 332 aaKnown RBP16.15■□□□□ 0.18
CLN3-213ENST00000565047 TBC1D7Q9P0N9 293 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 AFF4Q9UHB7 1163 aaKnown RBP16.15■□□□□ 0.18
CLN3-213ENST00000565047 AGO2Q9UKV8 859 aaKnown RBP16.15■□□□□ 0.18
CLN3-213ENST00000565047 KCNH3Q9ULD8 1083 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 C2CD2Q9Y426 696 aa16.15■□□□□ 0.18
CLN3-213ENST00000565047 USP34Q70CQ2 3546 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 KRBA1A5PL33 1030 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 F13A1P00488 732 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 NUBP1P53384 320 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 PARM1Q6UWI2 310 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 RNF19BQ6ZMZ0 732 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 EFCAB13Q8IY85 973 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 GLIS3Q8NEA6 775 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 CXorf38Q8TB03 319 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms