RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	C1orf127	Q8N9H9	656 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	DDX1	Q92499	740 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	ELMO3	Q96BJ8	720 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	KIF12	Q96FN5	646 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	SNX27	Q96L92	541 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	EIF2A	Q9BY44	585 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	XYLT2	Q9H1B5	865 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	VRTN	Q9H8Y1	702 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	SALL4	Q9UJQ4	1053 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	SAR1B	Q9Y6B6	198 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	UMODL1	Q5DID0	1318 aa		13.37	□□□□□ -0.27
SHMT2-233	ENST00000557529	TMCO5B	A8MYB1	307 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	STAU1	O95793	577 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	ATP1A1	P05023	1023 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	ITGB3	P05106	788 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	MME	P08473	750 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	PRLR	P16471	622 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	GRK4	P32298	578 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	NOP2	P46087	812 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	ACLY	P53396	1101 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	RBP5	P82980	135 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	ITGA7	Q13683	1181 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	PTGIS	Q16647	500 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	PPP1R2P3	Q6NXS1	205 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	TRIM72	Q6ZMU5	477 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	CEP112	Q8N8E3	955 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	RFFL	Q8WZ73	363 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	PCDHB18P	Q96TA0	734 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	FAM124B	Q9H5Z6	455 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	CHST12	Q9NRB3	414 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	DPP3	Q9NY33	737 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	SNTG2	Q9NY99	539 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	SIX4	Q9UIU6	781 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	NOC2L	Q9Y3T9	749 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	ANK1	P16157	1881 aa		13.36	□□□□□ -0.27
SHMT2-233	ENST00000557529	ENC1	O14682	589 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	XPOT	O43592	962 aa	Known RBP	13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	CAND2	O75155	1236 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	RPS6KA5	O75582	802 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	PALM	O75781	387 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	FTL	P02792	175 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	ZNF132	P52740	706 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	TUBB4B	P68371	445 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	PTK7	Q13308	1070 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	TCEAL1	Q15170	157 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	UBXN11	Q5T124	520 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	FAM228A	Q86W67	206 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	PALB2	Q86YC2	1186 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	RHOT2	Q8IXI1	618 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	SYCE1	Q8N0S2	351 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	TTC39C	Q8N584	583 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	BEST2	Q8NFU1	509 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	CXorf38	Q8TB03	319 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	GLT1D1	Q96MS3	346 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	CARD6	Q9BX69	1037 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	BCO2	Q9BYV7	579 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	PDCL3	Q9H2J4	239 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	CYP3A43	Q9HB55	503 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	TAS2R14	Q9NYV8	317 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	CNTN3	Q9P232	1028 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	NOD1	Q9Y239	953 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	TRIP12	Q14669	1992 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	GRIN2D	O15399	1336 aa		13.35	□□□□□ -0.27
SHMT2-233	ENST00000557529	GPR182	O15218	404 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	RECQL4	O94761	1208 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	TCP1	P17987	556 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	ABCB4	P21439	1286 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	GNA15	P30679	374 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	POLR2B	P30876	1174 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	ASPA	P45381	313 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	HADHB	P55084	474 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	GPC5	P78333	572 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	HTRA3	P83110	453 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	MGAT3	Q09327	533 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	MYO1E	Q12965	1108 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	CLEC16A	Q2KHT3	1053 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	ACAD10	Q6JQN1	1059 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	ALKAL1	Q6UXT8	129 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	HACE1	Q8IYU2	909 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	ARRDC4	Q8NCT1	418 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	TPCN2	Q8NHX9	752 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	TRIM11	Q96F44	468 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	HPDL	Q96IR7	371 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	BEGAIN	Q9BUH8	593 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	NXF3	Q9H4D5	531 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	ACP6	Q9NPH0	428 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	CISH	Q9NSE2	258 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	NXF1	Q9UBU9	619 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	UBQLN1	Q9UMX0	589 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	SNX12	Q9UMY4	172 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	AGAP1	Q9UPQ3	857 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	HYOU1	Q9Y4L1	999 aa		13.34	□□□□□ -0.27
SHMT2-233	ENST00000557529	GRID2IP	A4D2P6	1211 aa		13.33	□□□□□ -0.27
SHMT2-233	ENST00000557529	EFCAB8	A8MWE9	144 aa		13.33	□□□□□ -0.27
SHMT2-233	ENST00000557529	CD4	P01730	458 aa		13.33	□□□□□ -0.27
SHMT2-233	ENST00000557529	CHRNA1	P02708	482 aa		13.33	□□□□□ -0.27
SHMT2-233	ENST00000557529	MYBL1	P10243	752 aa		13.33	□□□□□ -0.27
SHMT2-233	ENST00000557529	KCNE1	P15382	129 aa		13.33	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms