RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 SPON1Q9HCB6 807 aa5.42□□□□□ -1.54
PRPF39-210ENST00000556718 ALG13Q9NP73 1137 aaKnown RBP5.42□□□□□ -1.54
PRPF39-210ENST00000556718 CHST12Q9NRB3 414 aa5.42□□□□□ -1.54
PRPF39-210ENST00000556718 DDX20Q9UHI6 824 aaKnown RBP5.42□□□□□ -1.54
PRPF39-210ENST00000556718 USP18Q9UMW8 372 aa5.42□□□□□ -1.54
PRPF39-210ENST00000556718 INSL6Q9Y581 213 aa5.42□□□□□ -1.54
PRPF39-210ENST00000556718 PCDHB6Q9Y5E3 794 aa5.42□□□□□ -1.54
PRPF39-210ENST00000556718 GAGE12BA1L429 117 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PIPSLA2A3N6 862 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 GAGE12HA6NDE8 117 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 RPLP2P05387 115 aaKnown RBP5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PFKMP08237 780 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PDCP20941 246 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 BMPR1AP36894 532 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 AVPR1BP47901 424 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 NEK3P51956 506 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 NRG3P56975 720 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 DUSP2Q05923 314 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PGS1Q32NB8 556 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PDCD4Q53EL6 469 aaKnown RBP5.41□□□□□ -1.54
PRPF39-210ENST00000556718 CCDC178Q5BJE1 867 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 CHST15Q7LFX5 561 aaPredicted RBP5.41□□□□□ -1.54
PRPF39-210ENST00000556718 TAS1R1Q7RTX1 841 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 DIS3LQ8TF46 1054 aaKnown RBP5.41□□□□□ -1.54
PRPF39-210ENST00000556718 ASB10Q8WXI3 467 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 COA7Q96BR5 231 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PAWRQ96IZ0 340 aaKnown RBP5.41□□□□□ -1.54
PRPF39-210ENST00000556718 COQ10AQ96MF6 247 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 ADI1Q9BV57 179 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 PRSS50Q9UI38 385 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 MAP3K2Q9Y2U5 619 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 CDY2AQ9Y6F7 541 aa5.41□□□□□ -1.54
PRPF39-210ENST00000556718 KRTAP29-1A8MX34 341 aaPredicted RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 PRR5-ARHGAP8B1AHC4 643 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 SEC24DO94855 1032 aaPredicted RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 ERBB2P04626 1255 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 HKR1P10072 659 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 CDK4P11802 303 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 CXCR5P32302 372 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 KRTAP10-9P60411 292 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 CCT2P78371 535 aaKnown RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 GUCY1B3Q02153 619 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 MORC3Q14149 939 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 MUM1L1Q5H9M0 696 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 GJC2Q5T442 439 aaPredicted RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 SP5Q6BEB4 398 aaPredicted RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 TSHZ1Q6ZSZ6 1077 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 CCDC149Q6ZUS6 474 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 MIGA2Q7L4E1 593 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 PLXDC1Q8IUK5 500 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 DENND1CQ8IV53 801 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 BOLLQ8N9W6 283 aaKnown RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 ZBTB34Q8NCN2 500 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 OR10H5Q8NGA6 315 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 GAB3Q8WWW8 586 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 TNIP3Q96KP6 325 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 ACO2Q99798 780 aaKnown RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 ELAC2Q9BQ52 826 aaKnown RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 LRFN3Q9BTN0 628 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 DDX21Q9NR30 783 aaKnown RBP eCLIP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 TESQ9UGI8 421 aaKnown RBP5.4□□□□□ -1.54
PRPF39-210ENST00000556718 TUBD1Q9UJT1 453 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 TMPRSS11EQ9UL52 423 aa5.4□□□□□ -1.54
PRPF39-210ENST00000556718 POLR2AP24928 1970 aaKnown RBP5.4□□□□□ -1.55
PRPF39-210ENST00000556718 FAM227AF5H4B4 570 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 H3BML4 177 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 ZBED1O96006 694 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 RHCEP18577 417 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 RHDQ02161 417 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 MALLQ13021 153 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 ZRSR2Q15696 482 aaKnown RBP5.39□□□□□ -1.55
PRPF39-210ENST00000556718 THEMIS2Q5TEJ8 643 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 PPP4R3AQ6IN85 833 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 GLB1L2Q8IW92 636 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 FAM43AQ8N2R8 423 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 TSPEARQ8WU66 669 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 KMT5AQ9NQR1 393 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 DNM3Q9UQ16 869 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 SALL3Q9BXA9 1300 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 ZMYM3Q14202 1370 aa5.39□□□□□ -1.55
PRPF39-210ENST00000556718 A0A1W2PR48 441 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 APAF1O14727 1248 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 TPP1O14773 563 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 SPDEFO95238 335 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 HRGP04196 525 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 DDX6P26196 483 aaKnown RBP eCLIP5.38□□□□□ -1.55
PRPF39-210ENST00000556718 FAM193AP78312 1265 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 TRIM25Q14258 630 aaKnown RBP5.38□□□□□ -1.55
PRPF39-210ENST00000556718 ADRM1Q16186 407 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 METRNLQ641Q3 311 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 DARS2Q6PI48 645 aaKnown RBP5.38□□□□□ -1.55
PRPF39-210ENST00000556718 LMBR1LQ6UX01 489 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 PRR18Q8N4B5 295 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 RNF169Q8NCN4 708 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 ACRBPQ8NEB7 543 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 HDAC10Q969S8 669 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 SLC39A13Q96H72 371 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 STRBPQ96SI9 672 aaKnown RBP5.38□□□□□ -1.55
PRPF39-210ENST00000556718 GREM2Q9H772 168 aa5.38□□□□□ -1.55
PRPF39-210ENST00000556718 SERPINB13Q9UIV8 391 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms