RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 AEBP2Q6ZN18 517 aaPredicted RBP29.18■■■□□ 2.26
PRPF39-210ENST00000556718 CHIC1Q5VXU3 224 aa27.61■■■□□ 2.01
PRPF39-210ENST00000556718 SENP3Q9H4L4 574 aaPredicted RBP24.78■■□□□ 1.56
PRPF39-210ENST00000556718 PHF23Q9BUL5 403 aaPredicted RBP24.52■■□□□ 1.52
PRPF39-210ENST00000556718 FOXD1Q16676 465 aa23.19■■□□□ 1.3
PRPF39-210ENST00000556718 PLPPR3Q6T4P5 718 aa22■■□□□ 1.11
PRPF39-210ENST00000556718 PPP6R1Q9UPN7 881 aa21.7■■□□□ 1.06
PRPF39-210ENST00000556718 PIAS4Q8N2W9 510 aaPredicted RBP21.63■■□□□ 1.05
PRPF39-210ENST00000556718 ADRA2BP18089 450 aa21.62■■□□□ 1.05
PRPF39-210ENST00000556718 MSH5O43196 834 aa21.6■■□□□ 1.05
PRPF39-210ENST00000556718 POTEDQ86YR6 584 aa21.23■□□□□ 0.99
PRPF39-210ENST00000556718 MAPK8IP2Q13387 824 aaPredicted RBP19.89■□□□□ 0.77
PRPF39-210ENST00000556718 DMRT2Q9Y5R5 561 aa19.68■□□□□ 0.74
PRPF39-210ENST00000556718 SCAF1Q9H7N4 1312 aaKnown RBP19.63■□□□□ 0.73
PRPF39-210ENST00000556718 PPP4R3CPQ6ZMV5 832 aa19.34■□□□□ 0.69
PRPF39-210ENST00000556718 CNKSR2Q8WXI2 1034 aa18.94■□□□□ 0.62
PRPF39-210ENST00000556718 HOXD11P31277 338 aaPredicted RBP18.93■□□□□ 0.62
PRPF39-210ENST00000556718 DCAF8L1A6NGE4 600 aa18.9■□□□□ 0.62
PRPF39-210ENST00000556718 RNF216Q9NWF9 866 aaPredicted RBP18.77■□□□□ 0.6
PRPF39-210ENST00000556718 CACNB1Q02641 598 aaPredicted RBP18.6■□□□□ 0.57
PRPF39-210ENST00000556718 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
PRPF39-210ENST00000556718 RNF39Q9H2S5 420 aa18.48■□□□□ 0.55
PRPF39-210ENST00000556718 NPM3O75607 178 aaKnown RBP18.33■□□□□ 0.52
PRPF39-210ENST00000556718 DNAJC5BQ9UF47 199 aa18.2■□□□□ 0.5
PRPF39-210ENST00000556718 C1QBPQ07021 282 aaKnown RBP18.16■□□□□ 0.5
PRPF39-210ENST00000556718 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.04■□□□□ 0.482e-7■■□□□ 12.5
PRPF39-210ENST00000556718 KCNA4P22459 653 aa17.98■□□□□ 0.47
PRPF39-210ENST00000556718 U3KPZ7 1027 aaPredicted RBP17.71■□□□□ 0.43
PRPF39-210ENST00000556718 SLC4A2P04920 1241 aa17.54■□□□□ 0.4
PRPF39-210ENST00000556718 SPINK5Q9NQ38 1064 aaPredicted RBP17.49■□□□□ 0.39
PRPF39-210ENST00000556718 CAPN15O75808 1086 aa17.4■□□□□ 0.38
PRPF39-210ENST00000556718 DSG3P32926 999 aa17.32■□□□□ 0.36
PRPF39-210ENST00000556718 TRHP20396 242 aaPredicted RBP17.14■□□□□ 0.33
PRPF39-210ENST00000556718 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.05■□□□□ 0.32
PRPF39-210ENST00000556718 ABCB7O75027 752 aa17.05■□□□□ 0.32
PRPF39-210ENST00000556718 APLP2Q06481 763 aa17.05■□□□□ 0.32
PRPF39-210ENST00000556718 HNRNPUL2Q1KMD3 747 aaKnown RBP17.05■□□□□ 0.32
PRPF39-210ENST00000556718 ZNF219Q9P2Y4 722 aaPredicted RBP17.02■□□□□ 0.32
PRPF39-210ENST00000556718 SAMD1Q6SPF0 538 aaPredicted RBP16.99■□□□□ 0.31
PRPF39-210ENST00000556718 SLC4A1APQ9BWU0 796 aaKnown RBP16.92■□□□□ 0.3
PRPF39-210ENST00000556718 MYCNP04198 464 aaPredicted RBP16.9■□□□□ 0.3
PRPF39-210ENST00000556718 FOXD4L1Q9NU39 408 aa16.72■□□□□ 0.27
PRPF39-210ENST00000556718 POLA2Q14181 598 aa16.66■□□□□ 0.26
PRPF39-210ENST00000556718 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
PRPF39-210ENST00000556718 POTEHQ6S545 545 aa16.61■□□□□ 0.25
PRPF39-210ENST00000556718 ZBTB22O15209 634 aa16.56■□□□□ 0.24
PRPF39-210ENST00000556718 RBM42Q9BTD8 480 aaKnown RBP16.43■□□□□ 0.22
PRPF39-210ENST00000556718 ZBTB12Q9Y330 459 aaPredicted RBP16.22■□□□□ 0.19
PRPF39-210ENST00000556718 ATXN8OSP0DMR3 200 aa16.16■□□□□ 0.18
PRPF39-210ENST00000556718 CHRDL2Q6WN34 429 aa16.15■□□□□ 0.18
PRPF39-210ENST00000556718 OSCARQ8IYS5 282 aa16.15■□□□□ 0.18
PRPF39-210ENST00000556718 AKT1S1Q96B36 256 aa16.09■□□□□ 0.17
PRPF39-210ENST00000556718 REM2Q8IYK8 340 aaPredicted RBP15.99■□□□□ 0.15
PRPF39-210ENST00000556718 FBLN2P98095 1184 aa15.85■□□□□ 0.13
PRPF39-210ENST00000556718 MKRN4PQ13434 485 aaPredicted RBP15.84■□□□□ 0.13
PRPF39-210ENST00000556718 PITPNM1O00562 1244 aa15.83■□□□□ 0.12
PRPF39-210ENST00000556718 PIP4P2Q8N4L2 257 aa15.79■□□□□ 0.12
PRPF39-210ENST00000556718 SPDYE2BA6NHP3 402 aa15.76■□□□□ 0.11
PRPF39-210ENST00000556718 SPDYE6P0CI01 402 aa15.76■□□□□ 0.11
PRPF39-210ENST00000556718 SPDYE2Q495Y8 402 aa15.76■□□□□ 0.11
PRPF39-210ENST00000556718 CSRNP3Q8WYN3 585 aa15.75■□□□□ 0.11
PRPF39-210ENST00000556718 FXR2P51116 673 aaKnown RBP eCLIP15.68■□□□□ 0.1
PRPF39-210ENST00000556718 ZNF692Q9BU19 519 aaPredicted RBP15.6■□□□□ 0.09
PRPF39-210ENST00000556718 SSUH2Q9Y2M2 353 aa15.58■□□□□ 0.08
PRPF39-210ENST00000556718 SP7Q8TDD2 431 aaPredicted RBP15.55■□□□□ 0.08
PRPF39-210ENST00000556718 EHMT2Q96KQ7 1210 aa15.54■□□□□ 0.08
PRPF39-210ENST00000556718 CLEC11AQ9Y240 323 aa15.52■□□□□ 0.08
PRPF39-210ENST00000556718 SPDYE1Q8NFV5 336 aaPredicted RBP15.5■□□□□ 0.07
PRPF39-210ENST00000556718 HAX1O00165 279 aa15.49■□□□□ 0.07
PRPF39-210ENST00000556718 PRKAR2AP13861 404 aaKnown RBP15.41■□□□□ 0.06
PRPF39-210ENST00000556718 EVX2Q03828 476 aa15.39■□□□□ 0.05
PRPF39-210ENST00000556718 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
PRPF39-210ENST00000556718 CHADLQ6NUI6 762 aa15.28■□□□□ 0.04
PRPF39-210ENST00000556718 PRR29P0C7W0 189 aa15.22■□□□□ 0.03
PRPF39-210ENST00000556718 C19orf67A6NJJ6 358 aa15.17■□□□□ 0.02
PRPF39-210ENST00000556718 SPDYE4A6NLX3 237 aa15.02■□□□□ -0
PRPF39-210ENST00000556718 FARP1Q9Y4F1 1045 aaPredicted RBP14.99□□□□□ -0.01
PRPF39-210ENST00000556718 GABBR2O75899 941 aa14.97□□□□□ -0.01
PRPF39-210ENST00000556718 CD44P16070 742 aaKnown RBP14.91□□□□□ -0.02
PRPF39-210ENST00000556718 CREBZFQ9NS37 354 aa14.89□□□□□ -0.03
PRPF39-210ENST00000556718 STAG3Q9UJ98 1225 aa14.87□□□□□ -0.03
PRPF39-210ENST00000556718 POTEIP0CG38 1075 aa14.7□□□□□ -0.06
PRPF39-210ENST00000556718 ZRANB1Q9UGI0 708 aa14.7□□□□□ -0.06
PRPF39-210ENST00000556718 ZNF579Q8NAF0 562 aaKnown RBP14.66□□□□□ -0.06
PRPF39-210ENST00000556718 PROM2Q8N271 834 aa14.65□□□□□ -0.06
PRPF39-210ENST00000556718 MNX1P50219 401 aaPredicted RBP14.64□□□□□ -0.07
PRPF39-210ENST00000556718 LHX8Q68G74 356 aa14.59□□□□□ -0.07
PRPF39-210ENST00000556718 CLCN6P51797 869 aa14.58□□□□□ -0.08
PRPF39-210ENST00000556718 GALR2O43603 387 aaPredicted RBP14.54□□□□□ -0.08
PRPF39-210ENST00000556718 NPM1P06748 294 aaKnown RBP eCLIP14.53□□□□□ -0.08
PRPF39-210ENST00000556718 PHF12Q96QT6 1004 aa14.53□□□□□ -0.08
PRPF39-210ENST00000556718 DCBLD2Q96PD2 775 aa14.52□□□□□ -0.09
PRPF39-210ENST00000556718 PAK3O75914 559 aaPredicted RBP14.49□□□□□ -0.09
PRPF39-210ENST00000556718 TSPYL2Q9H2G4 693 aaPredicted RBP14.36□□□□□ -0.11
PRPF39-210ENST00000556718 MIER1Q8N108 512 aa14.33□□□□□ -0.12
PRPF39-210ENST00000556718 MS4A3Q96HJ5 214 aa14.32□□□□□ -0.12
PRPF39-210ENST00000556718 PELP1Q8IZL8 1130 aaKnown RBP14.29□□□□□ -0.12
PRPF39-210ENST00000556718 CCDC61Q9Y6R9 512 aa14.28□□□□□ -0.12
PRPF39-210ENST00000556718 FKBP8Q14318 412 aa14.27□□□□□ -0.13
PRPF39-210ENST00000556718 POTEB2H3BUK9 544 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms