RNA–Protein interactions for RNA: ENST00000554636.1

VTI1B-203, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 3

Gene VTI1B, Length 565 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-203ENST00000554636 CCDC17Q96LX7 622 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 CLIC6Q96NY7 704 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 IPO9Q96P70 1041 aaKnown RBP4.93□□□□□ -1.62
VTI1B-203ENST00000554636 ALG1Q9BT22 464 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 FSD1Q9BTV5 496 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 LNPKQ9C0E8 428 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 PORCNQ9H237 461 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 RPAP3Q9H6T3 665 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-203ENST00000554636 PCDH18Q9HCL0 1135 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 NGRNQ9NPE2 291 aaKnown RBP4.93□□□□□ -1.62
VTI1B-203ENST00000554636 BTBD7Q9P203 1132 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 WASF3Q9UPY6 502 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 TMX2Q9Y320 296 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 MYH4Q9Y623 1939 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 COL11A1P12107 1806 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-203ENST00000554636 FRMPD3Q5JV73 1810 aa4.93□□□□□ -1.62
VTI1B-203ENST00000554636 PLIN4Q96Q06 1357 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 ALPK3Q96L96 1907 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 TRBV23-1A0A0A0MS06 115 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 A0A0D9SFI3 127 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 FAM221BA6H8Z2 402 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 WDR46O15213 610 aaKnown RBP4.92□□□□□ -1.62
VTI1B-203ENST00000554636 CYP1A1P04798 512 aaPredicted RBP4.92□□□□□ -1.62
VTI1B-203ENST00000554636 GJB1P08034 283 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 FAM153BP0C7A2 387 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 GNAT2P19087 354 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 TDO2P48775 406 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 UBXN2AP68543 259 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 PPARAQ07869 468 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 VPS53Q5VIR6 699 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 GPR142Q7Z601 462 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 UBE2Q1Q7Z7E8 422 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 AMOTL1Q8IY63 956 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.92□□□□□ -1.622e-11■■■■□ 23.5
VTI1B-203ENST00000554636 PHOSPHO1Q8TCT1 267 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 CLEC4DQ8WXI8 215 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 TRIB2Q92519 343 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 LPAR1Q92633 364 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 USP6NLQ92738 828 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 EVI5LQ96CN4 794 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 DEPDC7Q96QD5 511 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 ZFYVE21Q9BQ24 234 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 PAGR1Q9BTK6 254 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 KRTAP4-9Q9BYQ8 210 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 CD244Q9BZW8 370 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 CCDC113Q9H0I3 377 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 VCPKMTQ9H867 229 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 L2HGDHQ9H9P8 463 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 SIRPGQ9P1W8 387 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.92□□□□□ -1.62
VTI1B-203ENST00000554636 RABGAP1Q9Y3P9 1069 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 TELO2Q9Y4R8 837 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 PCDHA8Q9Y5H6 950 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 LAMA4Q16363 1823 aa4.92□□□□□ -1.62
VTI1B-203ENST00000554636 CEP290O15078 2479 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 FAM47E-STBD1D6RA91 191 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 HMGCRP04035 888 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SRGAP2CP0DJJ0 459 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 EEF2P13639 858 aaKnown RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 CYP2B6P20813 491 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 MAPK4P31152 587 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 MLLT6P55198 1093 aaPredicted RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SUMO1P63165 101 aaKnown RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 NUCB1Q02818 461 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 GRB14Q14449 540 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 MAP3K21Q5TCX8 1036 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 VASNQ6EMK4 673 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 PLEKHH3Q7Z736 793 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 ZNF589Q86UQ0 364 aaPredicted RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 CHD1LQ86WJ1 897 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SCUBE1Q8IWY4 988 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 TRIM48Q8IWZ4 208 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SPICE1Q8N0Z3 855 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 TXNDC5Q8NBS9 432 aaKnown RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 REPS2Q8NFH8 660 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 U2AF1L4Q8WU68 220 aaKnown RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 ZNF669Q96BR6 464 aaPredicted RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 EXOC2Q96KP1 924 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 FAM227BQ96M60 508 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SRPK1Q96SB4 655 aaKnown RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 MOV10L1Q9BXT6 1211 aaKnown RBP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.91□□□□□ -1.62
VTI1B-203ENST00000554636 NAPBQ9H115 298 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SH2D4AQ9H788 454 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 KANSL2Q9H9L4 492 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 FBXO28Q9NVF7 368 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 SNTG2Q9NY99 539 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 DSEQ9UL01 958 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 ZMYM6O95789 1325 aa4.91□□□□□ -1.62
VTI1B-203ENST00000554636 ZNFX1Q9P2E3 1918 aaKnown RBP4.9□□□□□ -1.62
VTI1B-203ENST00000554636 MROH6A6NGR9 719 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 KCNK3O14649 394 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 PRDM1O75626 825 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 FLOT1O75955 427 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 SGPL1O95470 568 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 NDUFB10O96000 172 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 HOXC6P09630 235 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 KRT15P19012 456 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 RGS2P41220 211 aa4.9□□□□□ -1.63
VTI1B-203ENST00000554636 GLRBP48167 497 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms