RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TREML2Q5T2D2 321 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 VHLLQ6RSH7 139 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 GADL1Q6ZQY3 521 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 METTL16Q86W50 562 aaKnown RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 ZNF808Q8N4W9 903 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 ANKRD13CQ8N6S4 541 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 KLHDC4Q8TBB5 520 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 TRIB2Q92519 343 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 SPATA32Q96LK8 384 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 CCDC140Q96MF4 163 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 OR14A2Q96R54 314 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 DPYSL5Q9BPU6 564 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 USP44Q9H0E7 712 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 CDIP1Q9H305 208 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 ACBD3Q9H3P7 528 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 CAPN10Q9HC96 672 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 SLC6A20Q9NP91 592 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 ECM29Q5VYK3 1845 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 GPR75-ASB3A0A0A6YYF3 556 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 TRIM75PA6NK02 468 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 MATN2O00339 956 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 IGSF3O75054 1194 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 CPP00450 1065 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 ENO2P09104 434 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-206ENST00000550611 HOXA7P31268 230 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-206ENST00000550611 GLRBP48167 497 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 SPP2Q13103 211 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 NFYCQ13952 458 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 CCL14Q16627 93 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 SLC4A10Q6U841 1118 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 CCDC129Q6ZRS4 1044 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 PRSS33Q8NF86 280 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 SMCR8Q8TEV9 937 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-206ENST00000550611 ZNF384Q8TF68 577 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 CLIP3Q96DZ5 547 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 TGIF2Q9GZN2 237 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 GINM1Q9NU53 330 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 CEP72Q9P209 647 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-206ENST00000550611 INPP5FQ9Y2H2 1132 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 LRRFIP2Q9Y608 721 aaKnown RBP4.38□□□□□ -1.71
LIMA1-206ENST00000550611 CHD6Q8TD26 2715 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 MYH3P11055 1940 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 VPS13AQ96RL7 3174 aa4.38□□□□□ -1.71
LIMA1-206ENST00000550611 SPEF2Q9C093 1822 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 TRANK1O15050 2925 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 SETXQ7Z333 2677 aaKnown RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 MED19A0JLT2 244 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 CIAO1O76071 339 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 MAP4K4O95819 1239 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 SLC5A1P13866 664 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 MYOGP15173 224 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 FAHP16930 419 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 BMP5P22003 454 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 ADRA1BP35368 520 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 PHKA1P46020 1223 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 TOP3AQ13472 1001 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 KCTD2Q14681 263 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 TRIM60Q495X7 471 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 GJC2Q5T442 439 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 SLC39A5Q6ZMH5 540 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 C16orf59Q7L2K0 433 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 PPIL6Q8IXY8 311 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 ZNF654Q8IZM8 581 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 BTN2A2Q8WVV5 523 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 CLEC4DQ8WXI8 215 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 CHAMP1Q96JM3 812 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 SCYL1Q96KG9 808 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 TTPALQ9BTX7 342 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 OSBPL5Q9H0X9 879 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 TXNRD2Q9NNW7 524 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 DENND2AQ9ULE3 1009 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 PDS5AQ29RF7 1337 aaKnown RBP4.37□□□□□ -1.71
LIMA1-206ENST00000550611 A0A1B0GUL6 1792 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 PLXNA1Q9UIW2 1896 aa4.37□□□□□ -1.71
LIMA1-206ENST00000550611 ATRXP46100 2492 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 TMEM191CA6NGB0 347 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 ZNF839A8K0R7 811 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 ERC2O15083 957 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 IL18BPO95998 194 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 SNRPB2P08579 225 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 LCP1P13796 627 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 ECI1P42126 302 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 BTDP43251 543 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 HMGCS2P54868 508 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 BACE1P56817 501 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 KRTAP10-11P60412 298 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 RACK1P63244 317 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 PFKPQ01813 784 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 GRIN1Q05586 938 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 FOXL1Q12952 345 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 PABPC4Q13310 644 aaKnown RBP eCLIP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 GNL2Q13823 731 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 RASGRF1Q13972 1273 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 NCAPHQ15003 741 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 PPP2R5EQ16537 467 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 ATP2B3Q16720 1220 aa4.36□□□□□ -1.71
LIMA1-206ENST00000550611 PAN2Q504Q3 1202 aaKnown RBP4.36□□□□□ -1.71
LIMA1-206ENST00000550611 ANO1Q5XXA6 986 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms