RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 TBCCQ15814 346 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 ACAD10Q6JQN1 1059 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 PID1Q7Z2X4 250 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 MCEEQ96PE7 176 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 AGPAT3Q9NRZ7 376 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.17□□□□□ -0.3
COL4A6-209ENST00000545689 TMEM131LA2VDJ0 1609 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 PDGFRAP16234 1089 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 RPS12P25398 132 aaKnown RBP13.17□□□□□ -0.3
COL4A6-209ENST00000545689 SLC30A5Q8TAD4 765 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 PRMT7Q9NVM4 692 aaPredicted RBP13.17□□□□□ -0.3
COL4A6-209ENST00000545689 ZC3H7BQ9UGR2 993 aaKnown RBP13.17□□□□□ -0.3
COL4A6-209ENST00000545689 AGAP1Q9UPQ3 857 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 CYP11B2P19099 503 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 RECQLP46063 649 aaPredicted RBP13.17□□□□□ -0.3
COL4A6-209ENST00000545689 ELMOD1Q8N336 334 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 MARCH10Q8NA82 808 aaPredicted RBP13.17□□□□□ -0.3
COL4A6-209ENST00000545689 FEZF2Q8TBJ5 459 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 ZSWIM1Q9BR11 485 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 KATNAL1Q9BW62 490 aa13.17□□□□□ -0.3
COL4A6-209ENST00000545689 GH1P01241 217 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 H2AFXP16104 143 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 IFNA8P32881 189 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 PGM1P36871 562 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 MAGEA4P43358 317 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 NSUN2Q08J23 767 aaKnown RBP eCLIP13.16□□□□□ -0.33e-9■■■■■ 39.7
COL4A6-209ENST00000545689 ITPK1Q13572 414 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ANO4Q32M45 955 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 TTI2Q6NXR4 508 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 NCLNQ969V3 563 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ANLNQ9NQW6 1124 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 BATF3Q9NR55 127 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ANKRD65E5RJM6 399 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 LRRC23Q53EV4 343 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ANKMY2Q8IV38 441 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 NOA1Q8NC60 698 aaKnown RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 SALL1Q9NSC2 1324 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 TOB1P50616 345 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 PTGISQ16647 500 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 IMPG1Q17R60 797 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 LONRF1Q17RB8 773 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ZC2HC1CQ53FD0 456 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 TTC39BQ5VTQ0 682 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 MFSD14CQ5VZR4 134 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 PPIL6Q8IXY8 311 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 EFHBQ8N7U6 833 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 C3orf70A6NLC5 250 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 MSH4O15457 936 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 MTSS1O43312 755 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 KLHL2O95198 593 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 CD44P16070 742 aaKnown RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 AARSP49588 968 aaKnown RBP eCLIP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 LMBRD2Q68DH5 695 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 SH2D3CQ8N5H7 860 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 GMCL1P1Q8NEA9 526 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ACTRT1Q8TDG2 376 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 CYFIP2Q96F07 1278 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 SLC13A4Q9UKG4 626 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 LCP1P13796 627 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 CARSP49589 748 aaKnown RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 IRAK1P51617 712 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 ABCE1P61221 599 aaKnown RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 RNF219Q5W0B1 726 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-209ENST00000545689 TEX9Q8N6V9 391 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 HIPK4Q8NE63 616 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 TMEM143Q96AN5 459 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 CMTM5Q96DZ9 223 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 TBX20Q9UMR3 447 aa13.16□□□□□ -0.3
COL4A6-209ENST00000545689 E5RI56 91 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 ICAM1P05362 532 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SREBF1P36956 1147 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 ACOT2P49753 483 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 NT5DC1Q5TFE4 455 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 TRPM8Q7Z2W7 1104 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 CXorf38Q8TB03 319 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 PGBD4Q96DM1 585 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 OTUD5Q96G74 571 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 KRT16P08779 473 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 DDX5P17844 614 aaKnown RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 CCND1P24385 295 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 PON1P27169 355 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 STX3Q13277 289 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SLC13A5Q86YT5 568 aaPredicted RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 PARD3BQ8TEW8 1205 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 ULK4Q96C45 1275 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 KCNH7Q9NS40 1196 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SNX5Q9Y5X3 404 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 GTPBP10A4D1E9 387 aaKnown RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SLC37A4O43826 429 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 GPD1P21695 349 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 POU5F1BQ06416 359 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 HP1BP3Q5SSJ5 553 aaPredicted RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 POTEAQ6S8J7 498 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 NT5C1AQ9BXI3 368 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SLC38A7Q9NVC3 462 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 NAGPAQ9UK23 515 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 INPP5FQ9Y2H2 1132 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 FNDC3AQ9Y2H6 1198 aaKnown RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 ITGA8P53708 1063 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 PDK1Q15118 436 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms