RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 MS4A14Q96JA4 679 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 SERPINB12Q96P63 405 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 RPS6KC1Q96S38 1066 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 OSBPL7Q9BZF2 842 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 WDR11Q9BZH6 1224 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 NLRC4Q9NPP4 1024 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 BLOC1S4Q9NUP1 217 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 TXLNGQ9NUQ3 528 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 ADAMTS1Q9UHI8 967 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 TPX2Q9ULW0 747 aaKnown RBP11.12□□□□□ -0.63
CHFR-219ENST00000541341 SLC4A7Q9Y6M7 1214 aa11.12□□□□□ -0.63
CHFR-219ENST00000541341 NLRC5Q86WI3 1866 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 A0A087X0T9 212 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 FAM228BP0C875 321 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 RARGP13631 454 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 MUTP22033 750 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 CLK2P49760 499 aaKnown RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 HSD17B4P51659 736 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 RNASELQ05823 741 aaKnown RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 KCNH2Q12809 1159 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 MYBPC2Q14324 1141 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 USH1GQ495M9 461 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 IQSEC1Q6DN90 963 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 HIBCHQ6NVY1 386 aaPredicted RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 PPP1R21Q6ZMI0 780 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 SPRED2Q7Z698 418 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 TMCO2Q7Z6W1 182 aaPredicted RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 DAAM2Q86T65 1068 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 MCF2L2Q86YR7 1114 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 LMNTD2Q8IXW0 634 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 RIBC1Q8N443 379 aaPredicted RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 DYDC1Q8WWB3 177 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 VWCEQ96DN2 955 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 SAAL1Q96ER3 474 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 ASB2Q96Q27 587 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 PSMB7Q99436 277 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 SH3GL3Q99963 347 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 MMTAG2Q9BU76 263 aaKnown RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 GANQ9H2C0 597 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 MTIF3Q9H2K0 278 aaKnown RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 CD248Q9HCU0 757 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 PCDHA12Q9UN75 941 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 TFR2Q9UP52 801 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 TRPC6Q9Y210 931 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 C15orf41Q9Y2V0 281 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 ARL2BPQ9Y2Y0 163 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 USP15Q9Y4E8 981 aaPredicted RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 ACTL7BQ9Y614 415 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 SIP14410 1827 aa11.11□□□□□ -0.63
CHFR-219ENST00000541341 PRRC2BQ5JSZ5 2229 aaKnown RBP11.11□□□□□ -0.63
CHFR-219ENST00000541341 WDR81Q562E7 1941 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 MEIS2O14770 477 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 CABYRO75952 493 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 NOL4O94818 638 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 ARHGEF15O94989 841 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 UCHL3P15374 230 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 ALDH3A1P30838 453 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 KCNQ1P51787 676 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 CALCOCO2Q13137 446 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 NAA25Q14CX7 972 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 SETDB1Q15047 1291 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 BMT2Q1RMZ1 405 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 DUPD1Q68J44 220 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 C11orf63Q6NUN7 778 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 TLDC1Q6P9B6 456 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 ARHGEF18Q6ZSZ5 1173 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 IRF2BP2Q7Z5L9 587 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 NT5DC3Q86UY8 548 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 METTL13Q8N6R0 699 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 GRK7Q8WTQ7 553 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 ZNF317Q96PQ6 595 aaPredicted RBP11.1□□□□□ -0.63
CHFR-219ENST00000541341 TXLNGYQ9BZA5 131 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 VTA1Q9NP79 307 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 SEL1LQ9UBV2 794 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 PCYOX1Q9UHG3 505 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 BAIAP2L1Q9UHR4 511 aa11.1□□□□□ -0.63
CHFR-219ENST00000541341 CORO1CQ9ULV4 474 aaPredicted RBP11.1□□□□□ -0.63
CHFR-219ENST00000541341 FRMPD4Q14CM0 1322 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 LOXHD1Q8IVV2 1947 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 FRMD3A2A2Y4 597 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 ANKRD62A6NC57 917 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 EPOPA6NHQ4 379 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 PP2D1A8MPX8 630 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 RASGRF2O14827 1237 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 EIF3DO15371 548 aaKnown RBP eCLIP11.09□□□□□ -0.63
CHFR-219ENST00000541341 P4HA2O15460 535 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 DAPK3O43293 454 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 SORBS3O60504 671 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 HIP1RO75146 1068 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 PHF2O75151 1096 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 CA3P07451 260 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 ATP2A2P16615 1042 aaKnown RBP11.09□□□□□ -0.63
CHFR-219ENST00000541341 ECHS1P30084 290 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 NKX3-2P78367 333 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 SARNPP82979 210 aaKnown RBP11.09□□□□□ -0.63
CHFR-219ENST00000541341 PURAQ00577 322 aaKnown RBP11.09□□□□□ -0.63
CHFR-219ENST00000541341 PPP2R5AQ15172 486 aa11.09□□□□□ -0.63
CHFR-219ENST00000541341 UAP1Q16222 522 aaPredicted RBP11.09□□□□□ -0.63
CHFR-219ENST00000541341 KNOP1Q1ED39 458 aaKnown RBP11.09□□□□□ -0.63
CHFR-219ENST00000541341 PARP6Q2NL67 630 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms