RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KRTAP15-1Q3LI76 137 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 TIGD2Q4W5G0 525 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 SNX33Q8WV41 574 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 ZG16BQ96DA0 208 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 MLST8Q9BVC4 326 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 IFT22Q9H7X7 185 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 SSH2Q76I76 1423 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 CACNA1AO00555 2505 aa5.21□□□□□ -1.58
CD44-235ENST00000532339 SZT2Q5T011 3432 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 KCPQ6ZWJ8 1503 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 B5MCH6 92 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 ZEB2O60315 1214 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 TMEM127O75204 238 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 RHOBTB3O94955 611 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 GASTP01350 101 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 LPLP06858 475 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 APOBEC3AP31941 199 aaPredicted RBP5.2□□□□□ -1.58
CD44-235ENST00000532339 GYS2P54840 703 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 LGALS4P56470 323 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 SESN3P58005 492 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 PTPROQ16827 1216 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 UGT8Q16880 541 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 CT83Q5H943 113 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 DDX46Q7L014 1031 aaKnown RBP5.2□□□□□ -1.58
CD44-235ENST00000532339 GPRIN1Q7Z2K8 1008 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 XYLT1Q86Y38 959 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 ACAP3Q96P50 834 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 TTC1Q99614 292 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 PRDM12Q9H4Q4 367 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 GPRC5DQ9NZD1 345 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 HS3ST4Q9Y661 456 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 QSER1Q2KHR3 1735 aa5.2□□□□□ -1.58
CD44-235ENST00000532339 AHRRA9YTQ3 701 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 DIRC3C9JPN6 131 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 PPFIA2O75334 1257 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 ITGA10O75578 1167 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 GCP02774 474 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 CTSSP25774 331 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 MGAT1P26572 445 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 NANOS3P60323 173 aaKnown RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 PDCD1Q15116 288 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 FSCN1Q16658 493 aaKnown RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 RNF187Q5TA31 235 aaPredicted RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 MBNL2Q5VZF2 373 aaKnown RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 DRICH1Q6PGQ1 229 aaPredicted RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 ABHD15Q6UXT9 468 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 PDZD4Q76G19 769 aaPredicted RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 GDF7Q7Z4P5 450 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 HDGFL2Q7Z4V5 671 aaPredicted RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 DNAJC10Q8IXB1 793 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 EAF2Q96CJ1 260 aaPredicted RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 MYEOVQ96EZ4 313 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 BRINP2Q9C0B6 783 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 ZNF768Q9H5H4 540 aaKnown RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 TRPM5Q9NZQ8 1165 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 APOBEC2Q9Y235 224 aaKnown RBP5.19□□□□□ -1.58
CD44-235ENST00000532339 PRKAB1Q9Y478 270 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 CEP162Q5TB80 1403 aa5.19□□□□□ -1.58
CD44-235ENST00000532339 TNRC6CQ9HCJ0 1690 aaKnown RBP5.18□□□□□ -1.58
CD44-235ENST00000532339 KIAA0232Q92628 1395 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 NAIPQ13075 1403 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 GAGE12BA1L429 117 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 GAGE12HA6NDE8 117 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 RNASET2O00584 256 aaKnown RBP5.18□□□□□ -1.58
CD44-235ENST00000532339 NEMP1O14524 444 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 PHF2O75151 1096 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 VEGFAP15692 232 aaPredicted RBP5.18□□□□□ -1.58
CD44-235ENST00000532339 CRHR1P34998 444 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 SOX10P56693 466 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.18□□□□□ -1.58
CD44-235ENST00000532339 RNF180Q86T96 592 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 THNSL2Q86YJ6 484 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 VRK3Q8IV63 474 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 LILRA3Q8N6C8 439 aaPredicted RBP5.18□□□□□ -1.58
CD44-235ENST00000532339 OR10H5Q8NGA6 315 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 ZNF480Q8WV37 535 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 RAX2Q96IS3 184 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 SLKQ9H2G2 1235 aaPredicted RBP5.18□□□□□ -1.58
CD44-235ENST00000532339 TOPORSQ9NS56 1045 aaPredicted RBP5.18□□□□□ -1.58
CD44-235ENST00000532339 TFCP2L1Q9NZI6 479 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 PACSIN3Q9UKS6 424 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 IQGAP3Q86VI3 1631 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 NRXN1Q9ULB1 1477 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 RPTORQ8N122 1335 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 ADAMTS7Q9UKP4 1686 aa5.18□□□□□ -1.58
CD44-235ENST00000532339 TBKBP1A7MCY6 615 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 B3GALT2O43825 422 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 RBP3P10745 1247 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 CDK11BP21127 795 aaKnown RBP5.17□□□□□ -1.58
CD44-235ENST00000532339 ENPP1P22413 925 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 ZFP36P26651 326 aaKnown RBP5.17□□□□□ -1.58
CD44-235ENST00000532339 NHLH2Q02577 135 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 TAP1Q03518 808 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 COL10A1Q03692 680 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 EFCAB12Q6NXP0 572 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 PLXDC1Q8IUK5 500 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 CLRN3Q8NCR9 226 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 MDM1Q8TC05 714 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 CRAMP1Q96RY5 1269 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 SPC25Q9HBM1 224 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms