RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TMEM132AQ24JP5 1023 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 DCAF4L1Q3SXM0 396 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 EEF1DP3Q658K8 133 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 IQCEQ6IPM2 695 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 PIK3AP1Q6ZUJ8 805 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 ELMOD1Q8N336 334 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 MCPH1Q8NEM0 835 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 PIGOQ8TEQ8 1089 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 GAB3Q8WWW8 586 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 CCDC113Q9H0I3 377 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 CEP72Q9P209 647 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 DAXXQ9UER7 740 aaPredicted RBP12.05□□□□□ -0.48
DDX41-216ENST00000513562 USP20Q9Y2K6 914 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 PCDHGA5Q9Y5G8 931 aa12.05□□□□□ -0.48
DDX41-216ENST00000513562 VWA8A3KMH1 1905 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 CPLX1O14810 134 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 SYN3O14994 580 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 XRCC6P12956 609 aaKnown RBP eCLIP12.04□□□□□ -0.48
DDX41-216ENST00000513562 GJA1P17302 382 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 ARPP19P56211 112 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 SOX4Q06945 474 aaPredicted RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 TWF1Q12792 350 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 TOB2Q14106 344 aaPredicted RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 MRPL58Q14197 206 aaKnown RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 TEAD2Q15562 447 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 PSAPL1Q6NUJ1 521 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 MAEAQ7L5Y9 396 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 CACNA2D4Q7Z3S7 1137 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 RALGPS2Q86X27 583 aaPredicted RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 YAF2Q8IY57 180 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 SYNPOQ8N3V7 929 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 SHKBP1Q8TBC3 707 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 BSNDQ8WZ55 320 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 ZNF512Q96ME7 567 aaPredicted RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 TMEM121BQ9BXQ6 578 aaPredicted RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 GPR88Q9GZN0 384 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 ASAH2Q9NR71 780 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 AFF4Q9UHB7 1163 aaKnown RBP12.04□□□□□ -0.48
DDX41-216ENST00000513562 FBXL5Q9UKA1 691 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 MAFFQ9ULX9 164 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 WASF3Q9UPY6 502 aa12.04□□□□□ -0.48
DDX41-216ENST00000513562 F5P12259 2224 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 CCDC163A0A0D9SF12 145 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 SMIM28A0A1B0GU29 152 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 H7C4K7 107 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 PODXLO00592 558 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 RPP40O75818 363 aaKnown RBP12.03□□□□□ -0.48
DDX41-216ENST00000513562 MYL4P12829 197 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 PSMA5P28066 241 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 MPLP40238 635 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 EARS2Q5JPH6 523 aaKnown RBP12.03□□□□□ -0.48
DDX41-216ENST00000513562 KBTBD6Q86V97 674 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 OXER1Q8TDS5 423 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 SMOC1Q9H4F8 434 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 SLITRK6Q9H5Y7 841 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 PCDHA12Q9UN75 941 aa12.03□□□□□ -0.48
DDX41-216ENST00000513562 LAMA1P25391 3075 aa12.02□□□□□ -0.48
DDX41-216ENST00000513562 A0A087WWV3 80 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 TMEM8BA6NDV4 472 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 EXTL3O43909 919 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 CDC45O75419 566 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 AKAP3O75969 853 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 ATP2B1P20020 1258 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 NAMPTP43490 491 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 PON2Q15165 354 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 CTXN3Q4LDR2 81 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 XKR4Q5GH76 650 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 RNF43Q68DV7 783 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 ZNF280DQ6N043 979 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 CPLX2Q6PUV4 134 aaKnown RBP12.02□□□□□ -0.49
DDX41-216ENST00000513562 TMC8Q8IU68 726 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 FAM200AQ8TCP9 573 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 ZNF274Q96GC6 653 aaPredicted RBP12.02□□□□□ -0.49
DDX41-216ENST00000513562 ZC3H10Q96K80 434 aaKnown RBP12.02□□□□□ -0.49
DDX41-216ENST00000513562 LRRC3BQ96PB8 259 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 LRRC3Q9BY71 257 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 VPS45Q9NRW7 570 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 SLC38A7Q9NVC3 462 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 YIPF1Q9Y548 306 aa12.02□□□□□ -0.49
DDX41-216ENST00000513562 ZFYVE26Q68DK2 2539 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 A0A1W2PRU2 124 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 FAM205CA6NFA0 338 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 CCDC192P0DO97 292 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 LIG1P18858 919 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 PXNP49023 591 aaPredicted RBP12.01□□□□□ -0.49
DDX41-216ENST00000513562 NOVA1P51513 510 aaKnown RBP12.01□□□□□ -0.49
DDX41-216ENST00000513562 CALCRLQ16602 461 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 NT5DC1Q5TFE4 455 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 ATF7IP2Q5U623 682 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 TCEAL6Q6IPX3 200 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 PKN3Q6P5Z2 889 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 ALKAL1Q6UXT8 129 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 DEPTORQ8TB45 409 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 TCEAL3Q969E4 200 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 TTC12Q9H892 705 aaPredicted RBP12.01□□□□□ -0.49
DDX41-216ENST00000513562 TOPORSQ9NS56 1045 aaPredicted RBP12.01□□□□□ -0.49
DDX41-216ENST00000513562 GJB4Q9NTQ9 266 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 GTSE1Q9NYZ3 720 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 TICRRQ7Z2Z1 1910 aa12.01□□□□□ -0.49
DDX41-216ENST00000513562 GIPC1O14908 333 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms