RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZFP14Q9HCL3 533 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 DNMT3BQ9UBC3 853 aaKnown RBP12.64□□□□□ -0.39
COL6A3-213ENST00000493475 USP20Q9Y2K6 914 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 MTCL1Q9Y4B5 1905 aaKnown RBP12.64□□□□□ -0.39
COL6A3-213ENST00000493475 MYO15AQ9UKN7 3530 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 FAM170BA6NMN3 283 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 SLC16A4O15374 487 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 ADAM12O43184 909 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 BMP15O95972 392 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 CLTAP09496 248 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 SP9P0CG40 484 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 BRCC3P46736 316 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 YWHAHQ04917 246 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-213ENST00000493475 PPP2R3AQ06190 1150 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 ST3GAL1Q11201 340 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 RABEP1Q15276 862 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 ARL6IP4Q66PJ3 421 aaKnown RBP12.63□□□□□ -0.39
COL6A3-213ENST00000493475 ING5Q8WYH8 240 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 IRF7Q92985 503 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 MCRS1Q96EZ8 462 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 AK8Q96MA6 479 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 CORO1BQ9BR76 489 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 NTPCRQ9BSD7 190 aaKnown RBP12.63□□□□□ -0.39
COL6A3-213ENST00000493475 KRTAP3-3Q9BYR6 98 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 KRTAP3-2Q9BYR7 98 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 FOXQ1Q9C009 403 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 BRD9Q9H8M2 597 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 GOLGA2P5Q9HBQ8 144 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 PTPRHQ9HD43 1115 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 ASAH2Q9NR71 780 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 PCDHB6Q9Y5E3 794 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 INSL5Q9Y5Q6 135 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 GVINP1Q7Z2Y8 2422 aa12.63□□□□□ -0.39
COL6A3-213ENST00000493475 SPTBN4Q9H254 2564 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 I3L4J1 428 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 ABLIM3O94929 683 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 FGF19O95750 216 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 KRT18P05783 430 aaKnown RBP12.62□□□□□ -0.39
COL6A3-213ENST00000493475 MCM2P49736 904 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 LIG4P49917 911 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 NRLP54845 237 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 NBR1Q14596 966 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 ECM1Q16610 540 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 ALKAL1Q6UXT8 129 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 TPRG1Q6ZUI0 275 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 C1orf186Q6ZWK4 172 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 CD302Q8IX05 232 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 YAF2Q8IY57 180 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 C4orf32Q8N8J7 132 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 DEPDC1BQ8WUY9 529 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 MSANTD3Q96H12 275 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 SUSD3Q96L08 255 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 DDX23Q9BUQ8 820 aaKnown RBP12.62□□□□□ -0.39
COL6A3-213ENST00000493475 RUSC1Q9BVN2 902 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 TRMT61BQ9BVS5 477 aaKnown RBP12.62□□□□□ -0.39
COL6A3-213ENST00000493475 FAM126AQ9BYI3 521 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-213ENST00000493475 SLITRK6Q9H5Y7 841 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 POLD4Q9HCU8 107 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 LTB4R2Q9NPC1 389 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 HCFC1R1Q9NWW0 138 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 NCDNQ9UBB6 729 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 AFF4Q9UHB7 1163 aaKnown RBP12.62□□□□□ -0.39
COL6A3-213ENST00000493475 ODF2LQ9ULJ1 636 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 UBQLN1Q9UMX0 589 aaKnown RBP12.62□□□□□ -0.39
COL6A3-213ENST00000493475 PCDHGA2Q9Y5H1 932 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 R4GN57 208 aa12.62□□□□□ -0.39
COL6A3-213ENST00000493475 WDR27A2RRH5 827 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 HNRNPDLO14979 420 aaKnown RBP12.61□□□□□ -0.39
COL6A3-213ENST00000493475 EDN1P05305 212 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 CYP3A5P20815 502 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 PROZP22891 400 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 UBA7P41226 1012 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 RPS9P46781 194 aaKnown RBP12.61□□□□□ -0.39
COL6A3-213ENST00000493475 ALDH1A3P47895 512 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 EPHB3P54753 998 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 ATP2C1P98194 919 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-213ENST00000493475 ADCY1Q08828 1119 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 ARMCX5Q6P1M9 558 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 DSTYKQ6XUX3 929 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 CEP120Q8N960 986 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 SYT2Q8N9I0 419 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-213ENST00000493475 C3orf58Q8NDZ4 430 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 FAM200AQ8TCP9 573 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 TBC1D32Q96NH3 1257 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.61□□□□□ -0.39
COL6A3-213ENST00000493475 DLGAP2Q9P1A6 1054 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 FBXL5Q9UKA1 691 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 RAB23Q9ULC3 237 aa12.61□□□□□ -0.39
COL6A3-213ENST00000493475 VWA3AA6NCI4 1184 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 OR6C75A6NL08 312 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 TBCAO75347 108 aaKnown RBP12.6□□□□□ -0.39
COL6A3-213ENST00000493475 FAM13AO94988 1023 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 PLA2G4BP0C869 781 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 MAPTP10636 758 aaKnown RBP12.6□□□□□ -0.39
COL6A3-213ENST00000493475 GLULP15104 373 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 PSMC3P17980 439 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 CSTF1Q05048 431 aaKnown RBP12.6□□□□□ -0.39
COL6A3-213ENST00000493475 MCL1Q07820 350 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 HYIQ5T013 277 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 HAUS6Q7Z4H7 955 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms