RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ANKS3Q6ZW76 656 aa26.8■■□□□ 1.88
UPF3A-209ENST00000492270 CD302Q8IX05 232 aa26.8■■□□□ 1.88
UPF3A-209ENST00000492270 BACE2Q9Y5Z0 518 aa26.8■■□□□ 1.88
UPF3A-209ENST00000492270 A0A1B0GVL5 298 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 SYN3O14994 580 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 ZMYND10O75800 440 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 PFKFB1P16118 471 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 WNT7BP56706 349 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 RAB33AQ14088 237 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 TMEM132DQ14C87 1099 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 POSTNQ15063 836 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 SMG7Q92540 1137 aaKnown RBP26.79■■□□□ 1.88
UPF3A-209ENST00000492270 CBWD1Q9BRT8 395 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 FAM213AQ9BRX8 229 aa26.79■■□□□ 1.88
UPF3A-209ENST00000492270 XPOTO43592 962 aaKnown RBP26.78■■□□□ 1.88
UPF3A-209ENST00000492270 ACTN4O43707 911 aaKnown RBP26.78■■□□□ 1.88
UPF3A-209ENST00000492270 HOXD13P35453 343 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 CUL4BQ13620 913 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 CCDC149Q6ZUS6 474 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 UNC13DQ70J99 1090 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 BEST2Q8NFU1 509 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 TSPAN18Q96SJ8 248 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 LRFN3Q9BTN0 628 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 PCIF1Q9H4Z3 704 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 ASB7Q9H672 318 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 ZDHHC7Q9NXF8 308 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 TECTAO75443 2155 aa26.78■■□□□ 1.88
UPF3A-209ENST00000492270 NOTCH4Q99466 2003 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 GOLGA8IPA6NC78 632 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 GOLGA8JA6NMD2 632 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 PAPLNO95428 1278 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 GARTP22102 1010 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 EHHADHQ08426 723 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 TMEM31Q5JXX7 168 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 FAM26FQ5R3K3 315 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 EFCAB13Q8IY85 973 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 TDRD5Q8NAT2 981 aaKnown RBP26.77■■□□□ 1.88
UPF3A-209ENST00000492270 PRKD2Q9BZL6 878 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 TMEM206Q9H813 350 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 DERAQ9Y315 318 aa26.77■■□□□ 1.88
UPF3A-209ENST00000492270 TBC1D4O60343 1298 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 GPR37L1O60883 481 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 C8AP07357 584 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 CMA1P23946 247 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 ROR1Q01973 937 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 MRPL58Q14197 206 aaKnown RBP26.76■■□□□ 1.87
UPF3A-209ENST00000492270 LIN9Q5TKA1 542 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 EPM2AIP1Q7L775 607 aaPredicted RBP26.76■■□□□ 1.87
UPF3A-209ENST00000492270 CEP57L1Q8IYX8 460 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 NOC3LQ8WTT2 800 aaKnown RBP26.76■■□□□ 1.87
UPF3A-209ENST00000492270 GDPD2Q9HCC8 539 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 PCDHB8Q9UN66 801 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 HPSEQ9Y251 543 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 ATP6V1DQ9Y5K8 247 aa26.76■■□□□ 1.87
UPF3A-209ENST00000492270 TIMM13Q9Y5L4 95 aaPredicted RBP26.76■■□□□ 1.87
UPF3A-209ENST00000492270 CLUHO75153 1309 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 M0QZQ0 153 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 SLFN14P0C7P3 912 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 AARSP49588 968 aaKnown RBP eCLIP26.75■■□□□ 1.87
UPF3A-209ENST00000492270 ARPP19P56211 112 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 C9orf57Q5W0N0 161 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 SLC8B1Q6J4K2 584 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 ARMCX5Q6P1M9 558 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 STXBP4Q6ZWJ1 553 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 BRSK2Q8IWQ3 736 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 SLC7A14Q8TBB6 771 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 PYM1Q9BRP8 204 aaKnown RBP26.75■■□□□ 1.87
UPF3A-209ENST00000492270 RHOBTB2Q9BYZ6 727 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 PIDD1Q9HB75 910 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 WDR6Q9NNW5 1121 aaKnown RBP26.75■■□□□ 1.87
UPF3A-209ENST00000492270 FBXL5Q9UKA1 691 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 C2CD2Q9Y426 696 aa26.75■■□□□ 1.87
UPF3A-209ENST00000492270 GTF3C5Q9Y5Q8 519 aaPredicted RBP26.75■■□□□ 1.87
UPF3A-209ENST00000492270 WDR27A2RRH5 827 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 TULP1O00294 542 aaPredicted RBP26.74■■□□□ 1.87
UPF3A-209ENST00000492270 SPTLC1O15269 473 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 EIF3DO15371 548 aaKnown RBP eCLIP26.74■■□□□ 1.87
UPF3A-209ENST00000492270 N4BP1O75113 896 aaKnown RBP26.74■■□□□ 1.87
UPF3A-209ENST00000492270 PTPN21Q16825 1174 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 CTXN3Q4LDR2 81 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 PPM1LQ5SGD2 360 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 CYP26C1Q6V0L0 522 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 APPL2Q8NEU8 664 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 PAGE5Q96GU1 130 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 FAM84AQ96KN4 292 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 USTQ9Y2C2 406 aa26.74■■□□□ 1.87
UPF3A-209ENST00000492270 ANO9A1A5B4 782 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 H7C4K7 107 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 CCL16O15467 120 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 IL18RAPO95256 599 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 POU5F1Q01860 360 aaKnown RBP26.73■■□□□ 1.87
UPF3A-209ENST00000492270 ZNF280DQ6N043 979 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 DSTYKQ6XUX3 929 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 ZNF507Q8TCN5 953 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 EDAQ92838 391 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 SCAND2PQ9GZW5 306 aaPredicted RBP26.73■■□□□ 1.87
UPF3A-209ENST00000492270 SLC39A2Q9NP94 309 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 DPP3Q9NY33 737 aa26.73■■□□□ 1.87
UPF3A-209ENST00000492270 RBAKQ9NYW8 714 aaPredicted RBP26.73■■□□□ 1.87
UPF3A-209ENST00000492270 RAPGEFL1Q9UHV5 662 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms