RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 UNC93B1Q9H1C4 597 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 CPSF3Q9UKF6 684 aaKnown RBP13.06□□□□□ -0.32
HDAC6-230ENST00000488543 PTPN22Q9Y2R2 807 aa13.06□□□□□ -0.32
HDAC6-230ENST00000488543 ZEB2O60315 1214 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 KPNA6O60684 536 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 ZC3H11AO75152 810 aaKnown RBP eCLIP13.05□□□□□ -0.321e-6■■■■■ 36.9
HDAC6-230ENST00000488543 CCDC172P0C7W6 258 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 TNNI1P19237 187 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 HOXC8P31273 242 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 PHKA2P46019 1235 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 MFAP3P55082 362 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 HSP90B2PQ58FF3 399 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 ATF7IP2Q5U623 682 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 SCARA3Q6AZY7 606 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 PALB2Q86YC2 1186 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 CEP120Q8N960 986 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 TMEM40Q8WWA1 233 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 AGPAT1Q99943 283 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 GTF2IRD1Q9UHL9 959 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 DMGDHQ9UI17 866 aaKnown RBP13.05□□□□□ -0.32
HDAC6-230ENST00000488543 SMIM35A0A1B0GVV1 85 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 SGPL1O95470 568 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 ACTN2P35609 894 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 GGCXP38435 758 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 ACLYP53396 1101 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 OSTNP61366 133 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 PTPROQ16827 1216 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 RNF180Q86T96 592 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 C10orf67Q8IYJ2 551 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 MS4A14Q96JA4 679 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 NOX5Q96PH1 765 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 LRRC1Q9BTT6 524 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 SELENOOQ9BVL4 669 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 TMEM51Q9NW97 253 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 NOCTQ9UK39 431 aaKnown RBP13.05□□□□□ -0.32
HDAC6-230ENST00000488543 TNFSF13BQ9Y275 285 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 SCN10AQ9Y5Y9 1956 aa13.05□□□□□ -0.32
HDAC6-230ENST00000488543 CHRNB2P17787 502 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 ARF4P18085 180 aaPredicted RBP13.04□□□□□ -0.32
HDAC6-230ENST00000488543 PRMT2P55345 433 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 NOP9Q86U38 636 aaKnown RBP13.04□□□□□ -0.32
HDAC6-230ENST00000488543 DHX38Q92620 1227 aaKnown RBP13.04□□□□□ -0.32
HDAC6-230ENST00000488543 CDT1Q9H211 546 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 PRMT7Q9NVM4 692 aaPredicted RBP13.04□□□□□ -0.32
HDAC6-230ENST00000488543 INTUQ9ULD6 942 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 JRKLQ9Y4A0 524 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 VGLL3A8MV65 326 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 TULP2O00295 520 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 H2AFZP0C0S5 128 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 TNFAIP3P21580 790 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 CST5P28325 142 aaPredicted RBP13.04□□□□□ -0.32
HDAC6-230ENST00000488543 PIK3CAP42336 1068 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 GCNT1Q02742 428 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 ZNF568Q3ZCX4 644 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 H2AFVQ71UI9 128 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 CREG2Q8IUH2 290 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 TMEM192Q8IY95 271 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 THNSL1Q8IYQ7 743 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 EPS8L1Q8TE68 723 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 APOBEC3GQ9HC16 384 aaKnown RBP13.04□□□□□ -0.32
HDAC6-230ENST00000488543 TAS2R14Q9NYV8 317 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 PCDHGC5Q9Y5F6 944 aa13.04□□□□□ -0.32
HDAC6-230ENST00000488543 GRID2IPA4D2P6 1211 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 CYP26A1O43174 497 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 GALCP54803 685 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 RNASE9P60153 205 aaKnown RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 PPARDQ03181 441 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 TTC19Q6DKK2 380 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 SPOPLQ6IQ16 392 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 WDR49Q8IV35 697 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 PCSK9Q8NBP7 692 aaKnown RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 FAM71BQ8TC56 605 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 ALS2CR12Q96Q35 445 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 OSBPL7Q9BZF2 842 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 ACP6Q9NPH0 428 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 TRMT13Q9NUP7 481 aaKnown RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 PALMO75781 387 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 GNAT1P11488 350 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 USP8P40818 1118 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 BIRC3Q13489 604 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 ITGA7Q13683 1181 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 ENOSF1Q7L5Y1 443 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 SLC47A2Q86VL8 602 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 RPUSD2Q8IZ73 545 aaKnown RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 PCDHB18PQ96TA0 734 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 TLR10Q9BXR5 811 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 PDZD7Q9H5P4 517 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 C1orf112Q9NSG2 853 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 FEZ2Q9UHY8 353 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 SNX12Q9UMY4 172 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 PACSIN2Q9UNF0 486 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-230ENST00000488543 NCANO14594 1321 aa13.03□□□□□ -0.32
HDAC6-230ENST00000488543 A0A0A6YYK5 440 aaPredicted RBP13.02□□□□□ -0.32
HDAC6-230ENST00000488543 ZSCAN5CA6NGD5 496 aaPredicted RBP13.02□□□□□ -0.32
HDAC6-230ENST00000488543 AGPSO00116 658 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 MEFVO15553 781 aaPredicted RBP13.02□□□□□ -0.32
HDAC6-230ENST00000488543 TSPAN1O60635 241 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 CTSHP09668 335 aa13.02□□□□□ -0.32
HDAC6-230ENST00000488543 NAP1L1P55209 391 aaKnown RBP13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms