RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 SLC39A2Q9NP94 309 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 FBXW11Q9UKB1 542 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 TIMM13Q9Y5L4 95 aaPredicted RBP15.1■□□□□ 0.01
SYNE1-226ENST00000488376 CDY1Q9Y6F8 540 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 TULP1O00294 542 aaPredicted RBP15.09■□□□□ 0.01
SYNE1-226ENST00000488376 TRAPPC3O43617 180 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 TBC1D4O60343 1298 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 CYP3A5P20815 502 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 AARSP49588 968 aaKnown RBP eCLIP15.09■□□□□ 0.01
SYNE1-226ENST00000488376 CREMQ03060 361 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 C9orf57Q5W0N0 161 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 ZNF507Q8TCN5 953 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 POP1Q99575 1024 aaKnown RBP15.09■□□□□ 0.01
SYNE1-226ENST00000488376 SCAND2PQ9GZW5 306 aaPredicted RBP15.09■□□□□ 0.01
SYNE1-226ENST00000488376 ATP6V1DQ9Y5K8 247 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 CITO14578 2027 aa15.09■□□□□ 0.01
SYNE1-226ENST00000488376 PI4K2BG5E9Z4 385 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 EIF3DO15371 548 aaKnown RBP eCLIP15.08■□□□□ 0
SYNE1-226ENST00000488376 N4BP1O75113 896 aaKnown RBP15.08■□□□□ 0
SYNE1-226ENST00000488376 GARTP22102 1010 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 MTHFRP42898 656 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 SYKP43405 635 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 STK4Q13043 487 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 RAB33AQ14088 237 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 MRPL58Q14197 206 aaKnown RBP15.08■□□□□ 0
SYNE1-226ENST00000488376 POSTNQ15063 836 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 KMT5BQ4FZB7 885 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 ATAT1Q5SQI0 421 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 ARMCX5Q6P1M9 558 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 ANKS3Q6ZW76 656 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 CBWD2Q8IUF1 395 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 BRSK2Q8IWQ3 736 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 KIAA0895Q8NCT3 520 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 BEST2Q8NFU1 509 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 CMASQ8NFW8 434 aaPredicted RBP15.08■□□□□ 0
SYNE1-226ENST00000488376 RIPOR3Q96MK2 946 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 TMEM206Q9H813 350 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 PCDHB8Q9UN66 801 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 BACE2Q9Y5Z0 518 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 PTPRJQ12913 1337 aa15.08■□□□□ 0
SYNE1-226ENST00000488376 PVALEFA0A1B0GWK0 134 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 A0A1W2PQ27 194 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 A0A1W2PQ64 194 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 A0A1W2PQD8 194 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 ANO9A1A5B4 782 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 WDR27A2RRH5 827 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 M0QZQ0 153 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 PIRO00625 290 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 SYN3O14994 580 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 CLIC2O15247 247 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 EXTL3O43909 919 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 ZMYND10O75800 440 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 CDR1P51861 262 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 ARPP19P56211 112 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 LILRA4P59901 499 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 ROR1Q01973 937 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 LMBRD2Q68DH5 695 aaPredicted RBP15.07■□□□□ 0
SYNE1-226ENST00000488376 SLC8B1Q6J4K2 584 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 CD302Q8IX05 232 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 SLC7A14Q8TBB6 771 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 SMG7Q92540 1137 aaKnown RBP15.07■□□□□ 0
SYNE1-226ENST00000488376 NECTIN4Q96NY8 510 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 SMOC2Q9H3U7 446 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 PLEKHA4Q9H4M7 779 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 ASB7Q9H672 318 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 PDE11AQ9HCR9 933 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 AGPAT3Q9NRZ7 376 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 DPP3Q9NY33 737 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 RBAKQ9NYW8 714 aaPredicted RBP15.07■□□□□ 0
SYNE1-226ENST00000488376 HSPBP1Q9NZL4 362 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 FBXL5Q9UKA1 691 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 DERAQ9Y315 318 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 C2CD2Q9Y426 696 aa15.07■□□□□ 0
SYNE1-226ENST00000488376 ANK1P16157 1881 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 CCL16O15467 120 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 DCXO43602 365 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 PAPLNO95428 1278 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 C8AP07357 584 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 OR4Q2P0C623 313 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 NTHL1P78549 312 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 NUCB2P80303 420 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 TFAMQ00059 246 aaKnown RBP15.06■□□□□ 0
SYNE1-226ENST00000488376 CTXN3Q4LDR2 81 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 PDXDC1Q6P996 788 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 KRBA2Q6ZNG9 492 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 C15orf39Q6ZRI6 1047 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 GPD1LQ8N335 351 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 CXorf38Q8TB03 319 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 HDAC7Q8WUI4 952 aa15.06■□□□□ 0
SYNE1-226ENST00000488376 PYM1Q9BRP8 204 aaKnown RBP15.06■□□□□ 0
SYNE1-226ENST00000488376 C2orf16Q68DN1 1984 aa15.05■□□□□ 0
SYNE1-226ENST00000488376 XPOTO43592 962 aaKnown RBP15.05■□□□□ -0
SYNE1-226ENST00000488376 ZNF202O95125 648 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 IL18RAPO95256 599 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 SEC24AO95486 1093 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 VNN2O95498 520 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 C1RP00736 705 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 ASGR2P07307 311 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 CYP2J2P51589 502 aa15.05■□□□□ -0
SYNE1-226ENST00000488376 BMT2Q1RMZ1 405 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms