RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TBCKQ8TEA7 893 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 FBF1Q8TES7 1133 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 USP33Q8TEY7 942 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 THOC1Q96FV9 657 aaKnown RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 GTF2H1P32780 548 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PRKD1Q15139 912 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF720Q7Z2F6 126 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PARD3BQ8TEW8 1205 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 MAIP1Q8WWC4 291 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 KBTBD13C9JR72 458 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ANKRD63C9JTQ0 380 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 KLRF2D3W0D1 207 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF195O14628 629 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 VHLP40337 213 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PTDSS1P48651 473 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 FMO5P49326 533 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TXNL4AP83876 142 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SPIDRQ14159 915 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SPIRE2Q8WWL2 714 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 GMCL1Q96IK5 515 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 UBXN10Q96LJ8 280 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ANKRD2Q9GZV1 360 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ITGB1BP2Q9UKP3 347 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ASAP1Q9ULH1 1129 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC22O60826 627 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PRKCHP24723 683 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TXKP42681 527 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 FMO1Q01740 532 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 EVX2Q03828 476 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SLC34A1Q06495 639 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TAOK1Q7L7X3 1001 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 GPIHBP1Q8IV16 184 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PRICKLE1Q96MT3 831 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CRNKL1Q9BZJ0 848 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PCMTD2Q9NV79 361 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 NDC80O14777 642 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CCNT1O60563 726 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ACO1P21399 889 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 USH1GQ495M9 461 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 AP1ARQ63HQ0 302 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TIFABQ6ZNK6 161 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 GADL1Q6ZQY3 521 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ARHGEF1Q92888 912 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ZWILCHQ9H900 591 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PKD2L1Q9P0L9 805 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ATXN10Q9UBB4 475 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 APEX2Q9UBZ4 518 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 DYTNA2CJ06 578 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 FAM47DPA6NHR8 397 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 KRIT1O00522 736 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 RPL13P26373 211 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CASP5P51878 434 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CLNS1AP54105 237 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 MECOMQ03112 1051 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TBCCQ15814 346 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TRMT5Q32P41 509 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PHLDB3Q6NSJ2 640 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PHF13Q86YI8 300 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 NME8Q8N427 588 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PICK1Q9NRD5 415 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SAMD15Q9P1V8 674 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 AMFRQ9UKV5 643 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PCDHAC2Q9Y5I4 1007 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 DOT1LQ8TEK3 1739 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 GSC2O15499 205 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TM7SF2O76062 418 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 MARK3P27448 753 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ATP5DP30049 168 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PFKPQ01813 784 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TMED1Q13445 227 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 BTG3Q14201 252 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 OGFRL1Q5TC84 451 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 METTL21CQ5VZV1 264 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 C2orf69Q8N8R5 385 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CABLES1Q8TDN4 633 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 GAB3Q8WWW8 586 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 DNAJC9Q8WXX5 260 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SLC5A5Q92911 643 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PLEKHG4BQ96PX9 1271 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 NMRK1Q9NWW6 199 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF646O15015 1829 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SLC22A2O15244 555 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CETN2P41208 172 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF132P52740 706 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 NAPAP54920 295 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 MXRA7P84157 204 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 PPP1R7Q15435 360 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 SNX30Q5VWJ9 437 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 CMTR1Q8N1G2 835 aaKnown RBP5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TRAIPQ9BWF2 469 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 TUFT1Q9NNX1 390 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 HOMER2Q9NSB8 354 aa5.68□□□□□ -1.5
SYNE1-220ENST00000471834 NR3C1P04150 777 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 TFAP4Q01664 338 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 EXOC3L4Q17RC7 722 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 FAXCQ5TGI0 409 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PEX26Q7Z412 305 aa5.67□□□□□ -1.5
SYNE1-220ENST00000471834 CHERPQ8IWX8 916 aaKnown RBP5.67□□□□□ -1.5
SYNE1-220ENST00000471834 PIP4K2CQ8TBX8 421 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms