RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 KCNJ6P48051 423 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 TM4SF4P48230 202 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 GCLCP48506 637 aaPredicted RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 CCNA1P78396 465 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 RBM10P98175 930 aaKnown RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 CNTN2Q02246 1040 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 CYP4F3Q08477 520 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 NOGQ13253 232 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 CRHR2Q13324 411 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 KCTD2Q14681 263 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 NR0B2Q15466 257 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 SF1Q15637 639 aaKnown RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 ZRSR1Q15695 479 aaKnown RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 PRR16Q569H4 304 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 SPECC1Q5M775 1068 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 DPP9Q86TI2 863 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 SPPL2CQ8IUH8 684 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 FAM177A1Q8N128 213 aaPredicted RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 LILRB2Q8N423 598 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 TMEM145Q8NBT3 493 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 LINC00301Q8NCQ3 95 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 NPLOC4Q8TAT6 608 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 LEO1Q8WVC0 666 aaPredicted RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 GJA10Q969M2 543 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 C1orf159Q96HA4 380 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 CLIC6Q96NY7 704 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 RMDN3Q96TC7 470 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 PANK2Q9BZ23 570 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 SCAND2PQ9GZW5 306 aaPredicted RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 PORCNQ9H237 461 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 A1CFQ9NQ94 594 aaKnown RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 LMBRD1Q9NUN5 540 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 CYP39A1Q9NYL5 469 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 COL20A1Q9P218 1284 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 FBXO40Q9UH90 709 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 DDX25Q9UHL0 483 aaKnown RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 RCOR1Q9UKL0 485 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 SLC45A1Q9Y2W3 748 aa4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 DDX49Q9Y6V7 483 aaKnown RBP4.59□□□□□ -1.67
TMEM39A-204ENST00000468545 NPHP3-ACAD11A0A0J9YXS1 232 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 A0A1W2PQ45 241 aaPredicted RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 A0A1W2PQY0 241 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 VWA3AA6NCI4 1184 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 DDX39AO00148 427 aaKnown RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PRODHO43272 600 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CA12O43570 354 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 NRDCO43847 1150 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 EDIL3O43854 480 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 TLR2O60603 784 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 FAM153BP0C7A2 387 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 ARP10275 920 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PLS3P13797 630 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PAMP19021 973 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CYP2B6P20813 491 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CCND2P30279 289 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 COPB2P35606 906 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 ECI1P42126 302 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 TECP42680 631 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 TRAPPC10P48553 1259 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 HSD17B4P51659 736 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 RTP1P59025 263 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 GRIN1Q05586 938 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 SLC39A14Q15043 492 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PGM5Q15124 567 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PTPAQ15257 358 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 TESK1Q15569 626 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CALCRLQ16602 461 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PRSS53Q2L4Q9 553 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 SLC35F1Q5T1Q4 408 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 ACBD5Q5T8D3 534 aaPredicted RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 LCE3BQ5TA77 95 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 YOD1Q5VVQ6 348 aaPredicted RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 HLA-DQA1Q5Y7H0 255 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 E4F1Q66K89 784 aaPredicted RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 ATL3Q6DD88 541 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 MCTP2Q6DN12 878 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 C17orf99Q6UX52 265 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 SEPT14Q6ZU15 432 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CEP128Q6ZU80 1094 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 GPR142Q7Z601 462 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PLEKHH3Q7Z736 793 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 ATG4DQ86TL0 474 aaPredicted RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 SLCO6A1Q86UG4 719 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PLA2G4DQ86XP0 818 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PPIL6Q8IXY8 311 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 LILRA2Q8N149 483 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 TMEM52Q8NDY8 209 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 ZSWIM2Q8NEG5 633 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 IL31RAQ8NI17 732 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CYP2W1Q8TAV3 490 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 KCNG4Q8TDN1 519 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 NSUN6Q8TEA1 469 aaKnown RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 FRS2Q8WU20 508 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PLIN2Q99541 437 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 NAP1L4Q99733 375 aaKnown RBP4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 CDC6Q99741 560 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 TMEM60Q9H2L4 133 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 MROH8Q9H579 483 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 GPRC5CQ9NQ84 441 aa4.58□□□□□ -1.68
TMEM39A-204ENST00000468545 PXMP2Q9NR77 195 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms