RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 AEBP2Q6ZN18 517 aaPredicted RBP16.17■□□□□ 0.18
TMEM39A-204ENST00000468545 CHIC1Q5VXU3 224 aa15.46■□□□□ 0.07
TMEM39A-204ENST00000468545 SENP3Q9H4L4 574 aaPredicted RBP13.77□□□□□ -0.21
TMEM39A-204ENST00000468545 PHF23Q9BUL5 403 aaPredicted RBP13.62□□□□□ -0.23
TMEM39A-204ENST00000468545 FOXD1Q16676 465 aa12.83□□□□□ -0.36
TMEM39A-204ENST00000468545 PLPPR3Q6T4P5 718 aa12.47□□□□□ -0.41
TMEM39A-204ENST00000468545 PPP6R1Q9UPN7 881 aa12.1□□□□□ -0.47
TMEM39A-204ENST00000468545 ADRA2BP18089 450 aa12.08□□□□□ -0.48
TMEM39A-204ENST00000468545 PIAS4Q8N2W9 510 aaPredicted RBP12.03□□□□□ -0.48
TMEM39A-204ENST00000468545 MSH5O43196 834 aa11.95□□□□□ -0.5
TMEM39A-204ENST00000468545 POTEDQ86YR6 584 aa11.47□□□□□ -0.57
TMEM39A-204ENST00000468545 MAPK8IP2Q13387 824 aaPredicted RBP11.06□□□□□ -0.64
TMEM39A-204ENST00000468545 SCAF1Q9H7N4 1312 aaKnown RBP11.03□□□□□ -0.64
TMEM39A-204ENST00000468545 PPP4R3CPQ6ZMV5 832 aa10.99□□□□□ -0.65
TMEM39A-204ENST00000468545 DMRT2Q9Y5R5 561 aa10.94□□□□□ -0.66
TMEM39A-204ENST00000468545 KCNA4P22459 653 aa10.87□□□□□ -0.67
TMEM39A-204ENST00000468545 NCBP3Q53F19 620 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-204ENST00000468545 CNKSR2Q8WXI2 1034 aa10.67□□□□□ -0.7
TMEM39A-204ENST00000468545 NPM3O75607 178 aaKnown RBP10.58□□□□□ -0.72
TMEM39A-204ENST00000468545 HOXD11P31277 338 aaPredicted RBP10.57□□□□□ -0.72
TMEM39A-204ENST00000468545 DCAF8L1A6NGE4 600 aa10.53□□□□□ -0.72
TMEM39A-204ENST00000468545 RNF216Q9NWF9 866 aaPredicted RBP10.52□□□□□ -0.73
TMEM39A-204ENST00000468545 SLC4A1APQ9BWU0 796 aaKnown RBP10.39□□□□□ -0.75
TMEM39A-204ENST00000468545 DNAJC5BQ9UF47 199 aa10.31□□□□□ -0.76
TMEM39A-204ENST00000468545 CACNB1Q02641 598 aaPredicted RBP10.21□□□□□ -0.77
TMEM39A-204ENST00000468545 EHMT2Q96KQ7 1210 aa10.21□□□□□ -0.77
TMEM39A-204ENST00000468545 RNF39Q9H2S5 420 aa10.21□□□□□ -0.77
TMEM39A-204ENST00000468545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.11□□□□□ -0.79
TMEM39A-204ENST00000468545 C1QBPQ07021 282 aaKnown RBP10.06□□□□□ -0.8
TMEM39A-204ENST00000468545 CSRNP3Q8WYN3 585 aa10.04□□□□□ -0.8
TMEM39A-204ENST00000468545 ZBTB22O15209 634 aa10□□□□□ -0.81
TMEM39A-204ENST00000468545 FOXD4L1Q9NU39 408 aa9.99□□□□□ -0.81
TMEM39A-204ENST00000468545 SLC4A2P04920 1241 aa9.95□□□□□ -0.82
TMEM39A-204ENST00000468545 U3KPZ7 1027 aaPredicted RBP9.89□□□□□ -0.83
TMEM39A-204ENST00000468545 MYCNP04198 464 aaPredicted RBP9.8□□□□□ -0.84
TMEM39A-204ENST00000468545 SPINK5Q9NQ38 1064 aaPredicted RBP9.73□□□□□ -0.85
TMEM39A-204ENST00000468545 CAPN15O75808 1086 aa9.71□□□□□ -0.86
TMEM39A-204ENST00000468545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.67□□□□□ -0.86
TMEM39A-204ENST00000468545 HNRNPUL2Q1KMD3 747 aaKnown RBP9.67□□□□□ -0.86
TMEM39A-204ENST00000468545 ATXN8OSP0DMR3 200 aa9.65□□□□□ -0.86
TMEM39A-204ENST00000468545 APLP2Q06481 763 aa9.62□□□□□ -0.87
TMEM39A-204ENST00000468545 SAMD1Q6SPF0 538 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-204ENST00000468545 DSG3P32926 999 aa9.6□□□□□ -0.87
TMEM39A-204ENST00000468545 TRHP20396 242 aaPredicted RBP9.59□□□□□ -0.87
TMEM39A-204ENST00000468545 ZNF219Q9P2Y4 722 aaPredicted RBP9.54□□□□□ -0.88
TMEM39A-204ENST00000468545 ABCB7O75027 752 aa9.51□□□□□ -0.89
TMEM39A-204ENST00000468545 ATF5Q9Y2D1 282 aaPredicted RBP9.48□□□□□ -0.89
TMEM39A-204ENST00000468545 POLA2Q14181 598 aa9.36□□□□□ -0.91
TMEM39A-204ENST00000468545 NISCHQ9Y2I1 1504 aa9.23□□□□□ -0.93
TMEM39A-204ENST00000468545 RBM42Q9BTD8 480 aaKnown RBP9.15□□□□□ -0.94
TMEM39A-204ENST00000468545 ZBTB12Q9Y330 459 aaPredicted RBP9.15□□□□□ -0.94
TMEM39A-204ENST00000468545 FBLN2P98095 1184 aa9.12□□□□□ -0.95
TMEM39A-204ENST00000468545 MKRN4PQ13434 485 aaPredicted RBP9.09□□□□□ -0.95
TMEM39A-204ENST00000468545 FKBP8Q14318 412 aa9.07□□□□□ -0.96
TMEM39A-204ENST00000468545 OSCARQ8IYS5 282 aa9.05□□□□□ -0.96
TMEM39A-204ENST00000468545 POTEHQ6S545 545 aa9.02□□□□□ -0.97
TMEM39A-204ENST00000468545 AKT1S1Q96B36 256 aa8.97□□□□□ -0.97
TMEM39A-204ENST00000468545 SPDYE4A6NLX3 237 aa8.96□□□□□ -0.98
TMEM39A-204ENST00000468545 CHRDL2Q6WN34 429 aa8.92□□□□□ -0.98
TMEM39A-204ENST00000468545 REM2Q8IYK8 340 aaPredicted RBP8.9□□□□□ -0.98
TMEM39A-204ENST00000468545 SPDYE2BA6NHP3 402 aa8.87□□□□□ -0.99
TMEM39A-204ENST00000468545 SPDYE6P0CI01 402 aa8.87□□□□□ -0.99
TMEM39A-204ENST00000468545 SPDYE2Q495Y8 402 aa8.87□□□□□ -0.99
TMEM39A-204ENST00000468545 PROM2Q8N271 834 aa8.85□□□□□ -0.99
TMEM39A-204ENST00000468545 ZNF692Q9BU19 519 aaPredicted RBP8.83□□□□□ -1
TMEM39A-204ENST00000468545 PITPNM1O00562 1244 aa8.81□□□□□ -1
TMEM39A-204ENST00000468545 SSUH2Q9Y2M2 353 aa8.81□□□□□ -1
TMEM39A-204ENST00000468545 FBXO3Q9UK99 471 aa8.75□□□□□ -1.01
TMEM39A-204ENST00000468545 PIP4P2Q8N4L2 257 aa8.74□□□□□ -1.01
TMEM39A-204ENST00000468545 PABPN1Q86U42 306 aaKnown RBP eCLIP8.72□□□□□ -1.01
TMEM39A-204ENST00000468545 CLEC11AQ9Y240 323 aa8.71□□□□□ -1.02
TMEM39A-204ENST00000468545 SPDYE1Q8NFV5 336 aaPredicted RBP8.7□□□□□ -1.02
TMEM39A-204ENST00000468545 FXR2P51116 673 aaKnown RBP eCLIP8.69□□□□□ -1.02
TMEM39A-204ENST00000468545 STAG3Q9UJ98 1225 aa8.62□□□□□ -1.03
TMEM39A-204ENST00000468545 VASPP50552 380 aaPredicted RBP8.61□□□□□ -1.03
TMEM39A-204ENST00000468545 PRKAR2AP13861 404 aaKnown RBP8.59□□□□□ -1.03
TMEM39A-204ENST00000468545 PRR29P0C7W0 189 aa8.57□□□□□ -1.04
TMEM39A-204ENST00000468545 HAX1O00165 279 aa8.56□□□□□ -1.04
TMEM39A-204ENST00000468545 CHADLQ6NUI6 762 aa8.53□□□□□ -1.04
TMEM39A-204ENST00000468545 AMER1Q5JTC6 1135 aaPredicted RBP8.52□□□□□ -1.05
TMEM39A-204ENST00000468545 SP7Q8TDD2 431 aaPredicted RBP8.5□□□□□ -1.05
TMEM39A-204ENST00000468545 IFNLR1Q8IU57 520 aaPredicted RBP8.48□□□□□ -1.05
TMEM39A-204ENST00000468545 MIER1Q8N108 512 aa8.47□□□□□ -1.05
TMEM39A-204ENST00000468545 PLCD3Q8N3E9 789 aa8.47□□□□□ -1.05
TMEM39A-204ENST00000468545 EVX2Q03828 476 aa8.46□□□□□ -1.06
TMEM39A-204ENST00000468545 RTN4Q9NQC3 1192 aaKnown RBP8.46□□□□□ -1.06
TMEM39A-204ENST00000468545 PLEKHG5O94827 1062 aa8.45□□□□□ -1.06
TMEM39A-204ENST00000468545 KLHL34Q8N239 644 aa8.42□□□□□ -1.06
TMEM39A-204ENST00000468545 C19orf67A6NJJ6 358 aa8.41□□□□□ -1.06
TMEM39A-204ENST00000468545 ZBTB47Q9UFB7 747 aaPredicted RBP8.41□□□□□ -1.06
TMEM39A-204ENST00000468545 FARP1Q9Y4F1 1045 aaPredicted RBP8.4□□□□□ -1.06
TMEM39A-204ENST00000468545 SPOCK2Q92563 424 aa8.38□□□□□ -1.07
TMEM39A-204ENST00000468545 CREBZFQ9NS37 354 aa8.37□□□□□ -1.07
TMEM39A-204ENST00000468545 CD44P16070 742 aaKnown RBP8.32□□□□□ -1.08
TMEM39A-204ENST00000468545 MNX1P50219 401 aaPredicted RBP8.3□□□□□ -1.08
TMEM39A-204ENST00000468545 GABBR2O75899 941 aa8.27□□□□□ -1.09
TMEM39A-204ENST00000468545 NPM1P06748 294 aaKnown RBP eCLIP8.26□□□□□ -1.09
TMEM39A-204ENST00000468545 NUBP1P53384 320 aa8.25□□□□□ -1.09
TMEM39A-204ENST00000468545 PKD2Q13563 968 aa8.25□□□□□ -1.09
TMEM39A-204ENST00000468545 ZRANB1Q9UGI0 708 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms