RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 CENPCQ03188 943 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 PTP4A2Q12974 167 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 NR1H3Q13133 447 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 ACAD10Q6JQN1 1059 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 MIS18BP1Q6P0N0 1132 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 LARGE2Q8N3Y3 721 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 XXYLT1Q8NBI6 393 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 BBOF1Q8ND07 529 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 MICAL1Q8TDZ2 1067 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 DDX1Q92499 740 aaKnown RBP9.04□□□□□ -0.96
VPS50-208ENST00000458707 INPP5DQ92835 1189 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 GJD4Q96KN9 370 aaPredicted RBP9.04□□□□□ -0.96
VPS50-208ENST00000458707 TMEM237Q96Q45 408 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 FOXP3Q9BZS1 431 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 TMEM117Q9H0C3 514 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 ST6GALNAC4Q9H4F1 302 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 MLXIPLQ9NP71 852 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 UBN1Q9NPG3 1134 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 CHST7Q9NS84 486 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 PI4KBQ9UBF8 816 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 CHORDC1Q9UHD1 332 aaPredicted RBP9.04□□□□□ -0.96
VPS50-208ENST00000458707 TRIM33Q9UPN9 1127 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 STK38LQ9Y2H1 464 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 COQ4Q9Y3A0 265 aa9.04□□□□□ -0.96
VPS50-208ENST00000458707 PSME4Q14997 1843 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ARHGEF35A5YM69 484 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 DDTLA6NHG4 134 aaPredicted RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 FAM47DPA6NHR8 397 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 A6NHS1 94 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 FOXO6A8MYZ6 492 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 CYP26A1O43174 497 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 CHMP2AO43633 222 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ASMTLO95671 621 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 BMP3P12645 472 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ATF2P15336 505 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 MXI1P50539 228 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 SCNN1DP51172 638 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 POLGP54098 1239 aaPredicted RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 WDR4P57081 412 aaKnown RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 FOXK1P85037 733 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 IL9RQ01113 521 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 KLF1Q13351 362 aaPredicted RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 MOGSQ13724 837 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 FAM98CQ17RN3 349 aaKnown RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 CEP55Q53EZ4 464 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 SLC30A10Q6XR72 485 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 CEP128Q6ZU80 1094 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ANKRD35Q8N283 1001 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 AGGF1Q8N302 714 aaeCLIP9.03□□□□□ -0.96
VPS50-208ENST00000458707 ATL2Q8NHH9 583 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 SH3TC2Q8TF17 1288 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 MAML1Q92585 1016 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ZDHHC15Q96MV8 337 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ACCSQ96QU6 501 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 CBWD1Q9BRT8 395 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 LXNQ9BS40 222 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 MRIQ9BWK5 157 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 IDI2Q9BXS1 227 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 PITPNM3Q9BZ71 974 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 UNC45AQ9H3U1 944 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 ETNK1Q9HBU6 452 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 AVENQ9NQS1 362 aaPredicted RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 HSPBP1Q9NZL4 362 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 LARSQ9P2J5 1176 aaKnown RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 ANAPC5Q9UJX4 755 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 PRR12Q9ULL5 1215 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 RPL26L1Q9UNX3 145 aaKnown RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 LRRC42Q9Y546 428 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 KIAA1217Q5T5P2 1943 aa9.03□□□□□ -0.96
VPS50-208ENST00000458707 COL11A2P13942 1736 aaPredicted RBP9.03□□□□□ -0.96
VPS50-208ENST00000458707 PRPF4O43172 522 aaKnown RBP eCLIP9.02□□□□□ -0.96
VPS50-208ENST00000458707 SERPINB2P05120 415 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 VIL1P09327 827 aaKnown RBP9.02□□□□□ -0.96
VPS50-208ENST00000458707 TAL1P17542 331 aaPredicted RBP9.02□□□□□ -0.96
VPS50-208ENST00000458707 SLC1A1P43005 524 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 GPC3P51654 580 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 GTF2BQ00403 316 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 SNX1Q13596 522 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 CLEC16AQ2KHT3 1053 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 CAPRIN2Q6IMN6 1127 aaKnown RBP9.02□□□□□ -0.96
VPS50-208ENST00000458707 PADI6Q6TGC4 694 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 TDRPQ86YL5 185 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 SRRM1Q8IYB3 904 aaKnown RBP9.02□□□□□ -0.96
VPS50-208ENST00000458707 TEX9Q8N6V9 391 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 CFAP61Q8NHU2 1237 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 HELQQ8TDG4 1101 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 DENND1AQ8TEH3 1009 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 SPDL1Q96EA4 605 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 DDX27Q96GQ7 796 aaKnown RBP9.02□□□□□ -0.96
VPS50-208ENST00000458707 FAM81BQ96LP2 452 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 PLEKHG4BQ96PX9 1271 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 CCDC77Q9BR77 488 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 HERPUD2Q9BSE4 406 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 MYLK2Q9H1R3 596 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 PCIF1Q9H4Z3 704 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 RNPEPL1Q9HAU8 725 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 LRRC4BQ9NT99 713 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 USH1CQ9Y6N9 552 aa9.02□□□□□ -0.96
VPS50-208ENST00000458707 SIP14410 1827 aa9.02□□□□□ -0.97
VPS50-208ENST00000458707 FAM196BA6NMK8 535 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms