RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 YBX3P16989 372 aaKnown RBP eCLIP15.22■□□□□ 0.03
LIG1-202ENST00000427526 GARTP22102 1010 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 RRM1P23921 792 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 CLDN10P78369 228 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 FSTL1Q12841 308 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 BRDTQ58F21 947 aaPredicted RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 ATG4AQ8WYN0 398 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SNF8Q96H20 258 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SGSM3Q96HU1 749 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 DCLK3Q9C098 648 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 NEU2Q9Y3R4 380 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 CNTN2Q02246 1040 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 XRRA1Q6P2D8 792 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 TAS1R3Q7RTX0 852 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 MAIP1Q8WWC4 291 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 CPA5Q8WXQ8 436 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 GPRASP2Q96D09 838 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 DONSONQ9NYP3 566 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 PCDHB2Q9Y5E7 798 aa15.21■□□□□ 0.03
LIG1-202ENST00000427526 CHUKO15111 745 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 ACSL3O95573 720 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 TTC4O95801 387 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 CYP1A1P04798 512 aaPredicted RBP15.21■□□□□ 0.02
LIG1-202ENST00000427526 MYBL1P10243 752 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 KCNA2P16389 499 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 PTP4A2Q12974 167 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 OTUD6AQ7L8S5 288 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 ZNF677Q86XU0 584 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 CLMNQ96JQ2 1002 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 FAM84AQ96KN4 292 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 CEP170P1Q96L14 293 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 FAM213AQ9BRX8 229 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 ELP3Q9H9T3 547 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 CD248Q9HCU0 757 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 ASIC3Q9UHC3 531 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 SLC12A4Q9UP95 1085 aa15.21■□□□□ 0.02
LIG1-202ENST00000427526 MAN1A1P33908 653 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 KLF1Q13351 362 aaPredicted RBP15.2■□□□□ 0.02
LIG1-202ENST00000427526 C9orf131Q5VYM1 1079 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 ELAC2Q9BQ52 826 aaKnown RBP15.2■□□□□ 0.02
LIG1-202ENST00000427526 SYT17Q9BSW7 474 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 BTBD7Q9P203 1132 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 GABBR1Q9UBS5 961 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 R3HDM2Q9Y2K5 976 aaKnown RBP15.2■□□□□ 0.02
LIG1-202ENST00000427526 CSADQ9Y600 493 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 IRF6O14896 467 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 ATP2C2O75185 946 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 CREB1P16220 341 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 IFNAR2P48551 515 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 ITGA8P53708 1063 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 RTP1P59025 263 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 CENPCQ03188 943 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 VSTM1Q6UX27 236 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 PARP9Q8IXQ6 854 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 ATL2Q8NHH9 583 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 ARHGEF2Q92974 986 aaKnown RBP15.2■□□□□ 0.02
LIG1-202ENST00000427526 XPNPEP1Q9NQW7 623 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 HOMER3Q9NSC5 361 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.2■□□□□ 0.025e-7■■■■□ 21.5
LIG1-202ENST00000427526 SAMD15Q9P1V8 674 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 WDR81Q562E7 1941 aa15.2■□□□□ 0.02
LIG1-202ENST00000427526 HNRNPDLO14979 420 aaKnown RBP15.19■□□□□ 0.02
LIG1-202ENST00000427526 TCEA3O75764 348 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 VIMP08670 466 aaKnown RBP15.19■□□□□ 0.02
LIG1-202ENST00000427526 CAV1Q03135 178 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 LLGL2Q6P1M3 1020 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 GADL1Q6ZQY3 521 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 MON1BQ7L1V2 547 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 FAM228AQ86W67 206 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 GRK7Q8WTQ7 553 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 TRIM11Q96F44 468 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 CCDC113Q9H0I3 377 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 C1orf112Q9NSG2 853 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 UMODL1Q5DID0 1318 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 OAS1P00973 400 aaKnown RBP15.19■□□□□ 0.02
LIG1-202ENST00000427526 GSTA1P08263 222 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 SP2Q02086 613 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 SWSAP1Q6NVH7 229 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 OTUD5Q96G74 571 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 ARHGAP28Q9P2N2 729 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.19■□□□□ 0.02
LIG1-202ENST00000427526 MAFGO15525 162 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 SNX3O60493 162 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 PROSCO94903 275 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 TRIP13Q15645 432 aaPredicted RBP15.19■□□□□ 0.02
LIG1-202ENST00000427526 KYNUQ16719 465 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 ZACNQ401N2 412 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 C2CD6Q53TS8 623 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 LBX2Q6XYB7 198 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 PHLDB2Q86SQ0 1253 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 ANKRD35Q8N283 1001 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 TRAIPQ9BWF2 469 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 R3HDMLQ9H3Y0 253 aa15.19■□□□□ 0.02
LIG1-202ENST00000427526 SBF1O95248 1867 aa15.18■□□□□ 0.02
LIG1-202ENST00000427526 TMEM120BA0PK00 339 aa15.18■□□□□ 0.02
LIG1-202ENST00000427526 O00370 1275 aa15.18■□□□□ 0.02
LIG1-202ENST00000427526 MGRN1O60291 552 aa15.18■□□□□ 0.02
LIG1-202ENST00000427526 DGAT1O75907 488 aa15.18■□□□□ 0.02
LIG1-202ENST00000427526 GAS8O95995 478 aa15.18■□□□□ 0.02
LIG1-202ENST00000427526 C4BPAP04003 597 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms