RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 FAM107AO95990 144 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 CYP1A2P05177 515 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 RARAP10276 462 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SSTR3P32745 418 aaPredicted RBP11.39□□□□□ -0.59
CUX1-205ENST00000425244 TCF7P36402 384 aaPredicted RBP11.39□□□□□ -0.59
CUX1-205ENST00000425244 ADCYAP1R1P41586 468 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SLCO1A2P46721 670 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 GPC3P51654 580 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 RWDD2BP57060 319 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 IFT88Q13099 833 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 ZNF792Q3KQV3 632 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 ABHD15Q6UXT9 468 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 USP37Q86T82 979 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 HOOK3Q86VS8 718 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 NPLOC4Q8TAT6 608 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 C1orf54Q8WWF1 131 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SPATA33Q96N06 139 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SELENOSQ9BQE4 189 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 TRIM7Q9C029 511 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 GRHL1Q9NZI5 618 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 ANAPC7Q9UJX3 599 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 MYH9P35579 1960 aaKnown RBP11.39□□□□□ -0.59
CUX1-205ENST00000425244 ASB14A6NK59 587 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SUPT20HL2P0C7V6 817 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 CTNNA2P26232 953 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 MAPK4P31152 587 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SREBF2Q12772 1141 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 NEDD9Q14511 834 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 SLC29A2Q14542 456 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 PPP1R7Q15435 360 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 LLGL2Q6P1M3 1020 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 GPD1LQ8N335 351 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 TMEM174Q8WUU8 243 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 CPA5Q8WXQ8 436 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 CYFIP2Q96F07 1278 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 TXLNGYQ9BZA5 131 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 POLR3FQ9H1D9 316 aaPredicted RBP11.39□□□□□ -0.59
CUX1-205ENST00000425244 PABPC3Q9H361 631 aaKnown RBP11.39□□□□□ -0.59
CUX1-205ENST00000425244 SEMA4AQ9H3S1 761 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 ZFYVE28Q9HCC9 887 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 ZNF302Q9NR11 478 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 C1orf112Q9NSG2 853 aa11.39□□□□□ -0.59
CUX1-205ENST00000425244 MTRF1LQ9UGC7 380 aaKnown RBP11.39□□□□□ -0.59
CUX1-205ENST00000425244 NFASCO94856 1347 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 LOXHD1Q8IVV2 1947 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 GMNCA6NCL1 334 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 TNNI1P19237 187 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 YY1P25490 414 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 ICAM3P32942 547 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 COILP38432 576 aaPredicted RBP11.38□□□□□ -0.59
CUX1-205ENST00000425244 EIF3BP55884 814 aaKnown RBP11.38□□□□□ -0.59
CUX1-205ENST00000425244 SF3A3Q12874 501 aaKnown RBP eCLIP11.38□□□□□ -0.59
CUX1-205ENST00000425244 NBPF20Q3BBV1 942 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 DAB2IPQ5VWQ8 1189 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 ACAD10Q6JQN1 1059 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 MICALCLQ6ZW33 695 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 CD101Q93033 1021 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 RNF25Q96BH1 459 aaPredicted RBP11.38□□□□□ -0.59
CUX1-205ENST00000425244 MAML3Q96JK9 1138 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 IFT74Q96LB3 600 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 SENP7Q9BQF6 1050 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 CCDC113Q9H0I3 377 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 EPB41L4BQ9H329 900 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 AZI2Q9H6S1 392 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.38□□□□□ -0.593e-7■■■■■ 27.8
CUX1-205ENST00000425244 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.38□□□□□ -0.59
CUX1-205ENST00000425244 PCDHA3Q9Y5H8 950 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 PLXNA1Q9UIW2 1896 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.38□□□□□ -0.59
CUX1-205ENST00000425244 PMM2O15305 246 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 MEFVO15553 781 aaPredicted RBP11.38□□□□□ -0.59
CUX1-205ENST00000425244 MTA2O94776 668 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 LIG4P49917 911 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 GRB14Q14449 540 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 CCL14Q16627 93 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 SPOPLQ6IQ16 392 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 METTL7BQ6UX53 244 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 TMC2Q8TDI7 906 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 SPIRE2Q8WWL2 714 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 RAPGEF5Q92565 580 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 MFSD14AQ96MC6 490 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 CEP89Q96ST8 783 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 UVRAGQ9P2Y5 699 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 PCYOX1Q9UHG3 505 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 CAPN7Q9Y6W3 813 aa11.38□□□□□ -0.59
CUX1-205ENST00000425244 GSTTP1A0A1W2PQM5 241 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 H0YHG0 523 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 PODXLO00592 558 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 TNPO2O14787 897 aaKnown RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 ECEL1O95672 775 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 TGFB3P10600 412 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 ACOT2P49753 483 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 TTLL4Q14679 1199 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 TCEAL1Q15170 157 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 TRIP13Q15645 432 aaPredicted RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 CLEC16AQ2KHT3 1053 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 PASD1Q8IV76 773 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 MORC4Q8TE76 937 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 ATG4AQ8WYN0 398 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 DDX1Q92499 740 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms