RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 FAM47EQ6ZV65 393 aa10.03□□□□□ -0.8
SNHG3-201ENST00000413987 USP50Q70EL3 339 aaPredicted RBP10.03□□□□□ -0.8
SNHG3-201ENST00000413987 MAP4K3Q8IVH8 894 aa10.03□□□□□ -0.8
SNHG3-201ENST00000413987 CDCA5Q96FF9 252 aa10.03□□□□□ -0.8
SNHG3-201ENST00000413987 MMS19Q96T76 1030 aa10.03□□□□□ -0.8
SNHG3-201ENST00000413987 WDR12Q9GZL7 423 aaKnown RBP10.03□□□□□ -0.8
SNHG3-201ENST00000413987 ACTR5Q9H9F9 607 aaPredicted RBP10.03□□□□□ -0.8
SNHG3-201ENST00000413987 ZFYVE28Q9HCC9 887 aa10.03□□□□□ -0.8
SNHG3-201ENST00000413987 AAASQ9NRG9 546 aa10.03□□□□□ -0.8
SNHG3-201ENST00000413987 IFT80Q9P2H3 777 aaPredicted RBP10.03□□□□□ -0.8
SNHG3-201ENST00000413987 C17orf113A0A1B0GUU1 675 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 FOXN1O15353 648 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 HSF2BPO75031 334 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 IGFBP4P22692 258 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 PTPREP23469 700 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 NPTX2P47972 431 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 NT5C2P49902 561 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 FXR1P51114 621 aaKnown RBP eCLIP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 ERVK-24P63145 666 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 VGLL4Q14135 290 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 ASPRV1Q53RT3 343 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 KDELC2Q7Z4H8 507 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 TBC1D21Q8IYX1 336 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 ST13P5Q8NFI4 369 aaPredicted RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 CAGE1Q8TC20 777 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 GPATCH1Q9BRR8 931 aaKnown RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 VCPKMTQ9H867 229 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 TCF7L2Q9NQB0 619 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 SERTAD1Q9UHV2 236 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 GUCA1BQ9UMX6 200 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 DUSP12Q9UNI6 340 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 ZHX2Q9Y6X8 837 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 BRCA2P51587 3418 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 PITPNM2Q9BZ72 1349 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 A0A1B0GUA9 196 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 MYO1FO00160 1098 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 POLR2DO15514 142 aaKnown RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 CTNND1O60716 968 aaKnown RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 NDUFA10O95299 355 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 TFRCP02786 760 aaKnown RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 PTPRAP18433 802 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 GBP2P32456 591 aaPredicted RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 IRX1P78414 480 aaPredicted RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 ACTN3Q08043 901 aaPredicted RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 CCDC40Q4G0X9 1142 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 CEP85LQ5SZL2 805 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 EMC10Q5UCC4 262 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 DCAF15Q66K64 600 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 EMBQ6PCB8 327 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 MMGT1Q8N4V1 131 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 WASF1Q92558 559 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 MED15Q96RN5 788 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 SLF1Q9BQI6 1058 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 PHF20Q9BVI0 1012 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 NOC4LQ9BVI4 516 aaKnown RBP10.02□□□□□ -0.81
SNHG3-201ENST00000413987 SPZ1Q9BXG8 430 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 VPS45Q9NRW7 570 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 MAP4K5Q9Y4K4 846 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 SAMM50Q9Y512 469 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 SMCHD1A6NHR9 2005 aa10.02□□□□□ -0.81
SNHG3-201ENST00000413987 OTOFQ9HC10 1997 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 B4E171 279 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 M0QX08 132 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 GIPC1O14908 333 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 KRT86O43790 486 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 RASSF9O75901 435 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 KRT38O76015 456 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 BMP3P12645 472 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 EZRP15311 586 aaKnown RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 ATXN1P54253 815 aaKnown RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 EPHB4P54760 987 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 NLRP5P59047 1200 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 NNTQ13423 1086 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 WSCD2Q2TBF2 565 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 USH1GQ495M9 461 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 SCYL3Q8IZE3 742 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 GMCL1P1Q8NEA9 526 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 CENPIQ92674 756 aaPredicted RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 RRP36Q96EU6 259 aaKnown RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 CLUHP3Q96NS8 147 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 EPN3Q9H201 632 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 RIOX1Q9H6W3 641 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 ZWILCHQ9H900 591 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 TRPV4Q9HBA0 871 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 LIMA1Q9UHB6 759 aaKnown RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 ANGPTL3Q9Y5C1 460 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 DOCK1Q14185 1865 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 HOXC11O43248 304 aaPredicted RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 PEX10O60683 326 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 SNUPNO95149 360 aaKnown RBP10.01□□□□□ -0.81
SNHG3-201ENST00000413987 HSPA4LO95757 839 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 HOXC12P31275 282 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 KRT9P35527 623 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 GNAQP50148 359 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 HMGCS2P54868 508 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 NAPAP54920 295 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 SLC12A2P55011 1212 aa10.01□□□□□ -0.81
SNHG3-201ENST00000413987 MEA1Q16626 185 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms