RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ATXN8OSP0DMR3 200 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 PURAQ00577 322 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 GFPT1Q06210 699 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 EHHADHQ08426 723 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 IFI16Q16666 785 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 JADE1Q6IE81 842 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 RAD9BQ6WBX8 426 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 CCDC25Q86WR0 208 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 SPATA2LQ8IUW3 424 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 MSL3Q8N5Y2 521 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 TMEM161BQ8NDZ6 487 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 ZSWIM2Q8NEG5 633 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 DNAJC19Q96DA6 116 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 SEPT10Q9P0V9 454 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 TFR2Q9UP52 801 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 PTPN22Q9Y2R2 807 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 DUOX1Q9NRD9 1551 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 RNF8O76064 485 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 SLC4A1P02730 911 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 CORO7P57737 925 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 NR1I3Q14994 352 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 E2F4Q16254 413 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 ALKBH5Q6P6C2 394 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 RPUSD2Q8IZ73 545 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 OTUD6BQ8N6M0 293 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 RIN2Q8WYP3 895 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 TATDN2Q93075 761 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 C18orf25Q96B23 403 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 RNPC3Q96LT9 517 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 MINDY3Q9H8M7 445 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 SLC28A3Q9HAS3 691 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 ADAM22Q9P0K1 906 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 SPTBN2O15020 2390 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 ACO1P21399 889 aaKnown RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 TRIM14Q14142 442 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 DNAJC24Q6P3W2 148 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 FOXR1Q6PIV2 292 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 ZNF560Q96MR9 790 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 MYCBPQ99417 103 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-205ENST00000392004 TIPINQ9BVW5 301 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 CDT1Q9H211 546 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 ZWILCHQ9H900 591 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 FRMPD4Q14CM0 1322 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 A0A087WUV0 522 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-205ENST00000392004 EBAG9O00559 213 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 NFICP08651 508 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 IRF1P10914 325 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 CTNNB1P35222 781 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 GNL1P36915 607 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-205ENST00000392004 BRCC3P46736 316 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 ITKQ08881 620 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 CTXN3Q4LDR2 81 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 LLGL2Q6P1M3 1020 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 LRRC31Q6UY01 552 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 ARNTL2Q8WYA1 636 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 HAUS1Q96CS2 278 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 B3GALT6Q96L58 329 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 CCDC113Q9H0I3 377 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 C17orf75Q9HAS0 396 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 STIM2Q9P246 746 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 MYH1P12882 1939 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 F5H423 210 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-205ENST00000392004 ATMINO43313 823 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-205ENST00000392004 FTCDO95954 541 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 NEFHP12036 1026 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 ABCD1P33897 745 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 TAF6P49848 677 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 MRPS25P82663 173 aaKnown RBP10.96□□□□□ -0.65
COL6A3-205ENST00000392004 KRT81Q14533 505 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 RWDD4Q6NW29 188 aaKnown RBP10.96□□□□□ -0.65
COL6A3-205ENST00000392004 KLHL7Q8IXQ5 586 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 FAM76AQ8TAV0 307 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 GPR152Q8TDT2 470 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 HAUS4Q9H6D7 363 aa10.96□□□□□ -0.65
COL6A3-205ENST00000392004 RP1L1Q8IWN7 2480 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-205ENST00000392004 A0A1B0GTH6 734 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 MFAP3LO75121 409 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 SELPP16109 830 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 BPIFB4P59827 614 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 PTENP60484 403 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 CCDC85BQ15834 202 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-205ENST00000392004 MIB1Q86YT6 1006 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 KAT5Q92993 513 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 CHP1Q99653 195 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 CYP4F11Q9HBI6 524 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 FAM105AQ9NUU6 356 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 UBQLN1Q9UMX0 589 aaKnown RBP10.96□□□□□ -0.66
COL6A3-205ENST00000392004 LY75O60449 1722 aa10.96□□□□□ -0.66
COL6A3-205ENST00000392004 ADAMTS7Q9UKP4 1686 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 FAM237AA0A1B0GTK4 181 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 ARVCFO00192 962 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 FGBP02675 491 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 ZNF865P0CJ78 1059 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 FERP16591 822 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 BMP6P22004 513 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 CKAP4Q07065 602 aaKnown RBP10.95□□□□□ -0.66
COL6A3-205ENST00000392004 SDHAF4Q5VUM1 108 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 CCDC91Q7Z6B0 441 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 PACS2Q86VP3 889 aa10.95□□□□□ -0.66
COL6A3-205ENST00000392004 RYBPQ8N488 228 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms