RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PROSCO94903 275 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 NPR1P16066 1061 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 CNGA1P29973 690 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 SSR1P43307 286 aaKnown RBP17.39■□□□□ 0.37
SDC4-201ENST00000372733 SETDB1Q15047 1291 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 STRIP1Q5VSL9 837 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 SLC39A4Q6P5W5 647 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 PASD1Q8IV76 773 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 MRRFQ96E11 262 aaKnown RBP17.39■□□□□ 0.37
SDC4-201ENST00000372733 ECE2O60344 883 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 WFS1O76024 890 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 KLRC2P26717 231 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 ABL2P42684 1182 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 SLC1A1P43005 524 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 TAF11Q15544 211 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 CCNG2Q16589 344 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 ZNF449Q6P9G9 518 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 ZCCHC9Q8N567 271 aaKnown RBP17.38■□□□□ 0.37
SDC4-201ENST00000372733 TMEM161BQ8NDZ6 487 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 AGBL1Q96MI9 1066 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 C11orf70Q9BRQ4 267 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 FHDC1Q9C0D6 1143 aaPredicted RBP17.38■□□□□ 0.37
SDC4-201ENST00000372733 KIAA1683Q9H0B3 1180 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 TRABDQ9H4I3 376 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 STARD13Q9Y3M8 1113 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 DENND3A2RUS2 1198 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 SMNDC1O75940 238 aaKnown RBP eCLIP17.38■□□□□ 0.37
SDC4-201ENST00000372733 CFHP08603 1231 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 ZSCAN5DPP0CG00 497 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 MOGSQ13724 837 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 PKN2Q16513 984 aaKnown RBP17.38■□□□□ 0.37
SDC4-201ENST00000372733 PCNX4Q63HM2 1172 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 LMBRD2Q68DH5 695 aaPredicted RBP17.38■□□□□ 0.37
SDC4-201ENST00000372733 IWS1Q96ST2 819 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 MRIQ9BWK5 157 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 KIAA1586Q9HCI6 787 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 AGO4Q9HCK5 861 aaKnown RBP17.38■□□□□ 0.37
SDC4-201ENST00000372733 SERPINA10Q9UK55 444 aa17.38■□□□□ 0.37
SDC4-201ENST00000372733 NFIBO00712 420 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 PEX11AO75192 247 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 ABHD2P08910 425 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 GM2AP17900 193 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 NSFP46459 744 aaKnown RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 NPTX2P47972 431 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 CCNHP51946 323 aaPredicted RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 SOX10P56693 466 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 CYP24A1Q07973 514 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 RELL1Q8IUW5 271 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 MAP4K3Q8IVH8 894 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 BBOF1Q8ND07 529 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 CHURC1Q8WUH1 139 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 PRMT6Q96LA8 375 aaPredicted RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 LRRC37BQ96QE4 947 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 ZMYND8Q9ULU4 1186 aaPredicted RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 USH1CQ9Y6N9 552 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 PI4K2BG5E9Z4 385 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 ENTPD3O75355 529 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 YARSP54577 528 aaKnown RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 SNRPFP62306 86 aaKnown RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 TKFCQ3LXA3 575 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 XKR9Q5GH70 373 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 MON1BQ7L1V2 547 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 RIBC1Q8N443 379 aaPredicted RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 DENND1AQ8TEH3 1009 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 BSNDQ8WZ55 320 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 POMGNT1Q8WZA1 660 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 ZNF219Q9P2Y4 722 aaPredicted RBP17.37■□□□□ 0.37
SDC4-201ENST00000372733 USP21Q9UK80 565 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 EXOC7Q9UPT5 735 aa17.37■□□□□ 0.37
SDC4-201ENST00000372733 TCP10L2B9ZVM9 353 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 POTEJP0CG39 1038 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 KRT15P19012 456 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 RPA3P35244 121 aaPredicted RBP17.36■□□□□ 0.37
SDC4-201ENST00000372733 SPARCL1Q14515 664 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 KAZNQ674X7 775 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 RHOT1Q8IXI2 618 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 FAM13CQ8NE31 585 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 CFAP57Q96MR6 1250 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 TMX4Q9H1E5 349 aaPredicted RBP17.36■□□□□ 0.37
SDC4-201ENST00000372733 RNPEPL1Q9HAU8 725 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 C1orf112Q9NSG2 853 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 PSTPIP1O43586 416 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 CBX6O95503 412 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 KRT10P13645 584 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 ETS1P14921 441 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 DSG3P32926 999 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 GCNT1Q02742 428 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 SLC1A5Q15758 541 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 PARP6Q2NL67 630 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 NAIF1Q69YI7 327 aaPredicted RBP17.36■□□□□ 0.37
SDC4-201ENST00000372733 TRIM68Q6AZZ1 485 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 CAPRIN2Q6IMN6 1127 aaKnown RBP17.36■□□□□ 0.37
SDC4-201ENST00000372733 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.36■□□□□ 0.37
SDC4-201ENST00000372733 TMC2Q8TDI7 906 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 FAM81BQ96LP2 452 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 MFSD14AQ96MC6 490 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 GLIS2Q9BZE0 524 aaPredicted RBP17.36■□□□□ 0.37
SDC4-201ENST00000372733 CCPG1Q9ULG6 757 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 SYNPO2Q9UMS6 1093 aa17.36■□□□□ 0.37
SDC4-201ENST00000372733 MAGEB2O15479 319 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms