RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PIH1D3Q9NQM4 214 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 GID8Q9NWU2 228 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SYBUQ9NX95 663 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 EHD2Q9NZN4 543 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SATB2Q9UPW6 733 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF711Q9Y462 761 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 RGS12O14924 1447 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 F8W810 466 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 PSMD3O43242 534 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 MYBL1P10243 752 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SFNP31947 248 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SESN2P58004 480 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SLC25A41Q8N5S1 370 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SHCBP1Q8NEM2 672 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 TGS1Q96RS0 853 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 BBS2Q9BXC9 721 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 GOLPH3LQ9H4A5 285 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ZFATQ9P243 1243 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 HDAC6Q9UBN7 1215 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 PTPRUQ92729 1446 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF189O75820 626 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SRP72O76094 671 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 EIF2S1P05198 315 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 DYNC1I2Q13409 638 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 MDH1BQ5I0G3 518 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 MTHFD1LQ6UB35 978 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 PARVBQ9HBI1 364 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 PCDHB7Q9Y5E2 793 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 NRXN1Q9ULB1 1477 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SLIT1O75093 1534 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 C16orf96A6NNT2 1141 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 CCDC188H7C350 402 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ALDH1A3P47895 512 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 TAF1CQ15572 869 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SYCP2LQ5T4T6 812 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ICE2Q659A1 982 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 PLEKHF1Q96S99 279 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ACAD9Q9H845 621 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 KLHL11Q9NVR0 708 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 RBAKQ9NYW8 714 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 STOML1Q9UBI4 398 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SOX13Q9UN79 622 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 GTF2E2P29084 291 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF157P51786 506 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 ZRANB3Q5FWF4 1079 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 CALR3Q96L12 384 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SH3GL2Q99962 352 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 GPR63Q9BZJ6 419 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 TMEM131LA2VDJ0 1609 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 TK2O00142 265 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 MYO1CO00159 1063 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 RGS4P49798 205 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 GYS2P54840 703 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 RNASE11Q8TAA1 199 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 INTS2Q9H0H0 1204 aaKnown RBP10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SLC39A10Q9ULF5 831 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 FHOD1Q9Y613 1164 aa10.68□□□□□ -0.7
CLIP1-202ENST00000358808 SETD1BQ9UPS6 1966 aaKnown RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 HEATR9A2RTY3 570 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 SH2B2O14492 632 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 KCNN4O15554 427 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 CCDC22O60826 627 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 CLASP2O75122 1294 aaKnown RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 MYBP10242 640 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 RARBP10826 455 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ETFBP38117 255 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF211Q13398 564 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 MAPRE1Q15691 268 aaKnown RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 TRAF7Q6Q0C0 670 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 PTPRN2Q92932 1015 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 KATNAL1Q9BW62 490 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ELP3Q9H9T3 547 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 GALNT8Q9NY28 637 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 SPATA31A5Q5VU36 1347 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 SPATA31A7Q8IWB4 1347 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 GOLGA8TH3BQL2 631 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ATP8B1O43520 1251 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 KRT16P08779 473 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 RGS2P41220 211 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 HNRNPH2P55795 449 aaKnown RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 CNTN1Q12860 1018 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 LAMB3Q13751 1172 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 FBXO38Q6PIJ6 1188 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF589Q86UQ0 364 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 GPD1LQ8N335 351 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 PNKPQ96T60 521 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 YIPF3Q9GZM5 350 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 NSMCE4AQ9NXX6 385 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 CEP72Q9P209 647 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 EIF4E1BA6NMX2 242 aaKnown RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 KRT20P35900 424 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ATXN3P54252 364 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-202ENST00000358808 MAP4K1Q92918 833 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 SNF8Q96H20 258 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 CD209Q9NNX6 404 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 MROH2AA6NES4 1674 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 AP3B1O00203 1094 aa10.67□□□□□ -0.7
CLIP1-202ENST00000358808 ZBTB5O15062 677 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms