RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 FNTAP49354 379 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 YWHAGP61981 247 aaKnown RBP eCLIP13.42□□□□□ -0.26
RETREG3-201ENST00000309428 KIF22Q14807 665 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 ANKRD20A2Q5SQ80 823 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 ANKRD20A1Q5TYW2 823 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 SULF1Q8IWU6 871 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 CCDC89Q8N998 374 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 PLEKHO2Q8TD55 490 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 FAM161BQ96MY7 647 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 GGA3Q9NZ52 723 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 COX16Q9P0S2 106 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 SYNGAP1Q96PV0 1343 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 TBX3O15119 743 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 GRAP2O75791 330 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 CHRNA3P32297 505 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 SERPINB6P35237 376 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 TMEM62Q0P6H9 643 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 PLCB4Q15147 1175 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 BRDTQ58F21 947 aaPredicted RBP13.42□□□□□ -0.26
RETREG3-201ENST00000309428 DALRD3Q5D0E6 543 aaKnown RBP13.42□□□□□ -0.26
RETREG3-201ENST00000309428 CYP4A22Q5TCH4 519 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 SV2AQ7L0J3 742 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 FAM160B2Q86V87 743 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 MCF2L2Q86YR7 1114 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 TEKT4Q8WW24 435 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 MSTO1Q9BUK6 570 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 IMPG2Q9BZV3 1241 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 PIM2Q9P1W9 311 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 SAE1Q9UBE0 346 aaPredicted RBP13.42□□□□□ -0.26
RETREG3-201ENST00000309428 CCND1P24385 295 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 NUMBP49757 651 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 CDR2Q01850 454 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 TRAF1Q13077 416 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 SH3GL3Q99963 347 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 PDCD2LQ9BRP1 358 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 CDC42EP4Q9H3Q1 356 aaKnown RBP13.42□□□□□ -0.26
RETREG3-201ENST00000309428 GINM1Q9NU53 330 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 PLCH1Q4KWH8 1693 aa13.42□□□□□ -0.26
RETREG3-201ENST00000309428 LRP5O75197 1615 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 EME2A4GXA9 379 aaPredicted RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 GH1P01241 217 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 CFHP08603 1231 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 VIL1P09327 827 aaKnown RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SKIP12755 728 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 PSMC5P62195 406 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 IRX1P78414 480 aaPredicted RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 ITIH3Q06033 890 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 KCNT1Q5JUK3 1230 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 P3H4Q92791 437 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 NAF1Q96HR8 494 aaKnown RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 PCDHGC5Q9Y5F6 944 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 PCDHA10Q9Y5I2 948 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 BCORQ6W2J9 1755 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SERPINB4P48594 390 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 EPHB1P54762 984 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 TRPC3Q13507 836 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 CCDC60Q8IWA6 550 aaPredicted RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 ZBED8Q8IZ13 594 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 RAB3IL1Q8TBN0 382 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 RUBCNQ92622 972 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SLC5A5Q92911 643 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 PFDN1O60925 122 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 ICAM1P05362 532 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 KDSRQ06136 332 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SPARCL1Q14515 664 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 PGM5Q15124 567 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 TMCO4Q5TGY1 634 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 KRT39Q6A163 491 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SCARA3Q6AZY7 606 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SCYL2Q6P3W7 929 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 CCDC110Q8TBZ0 833 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SLC7A3Q8WY07 619 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 SHCBP1LQ9BZQ2 653 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 KDM4CQ9H3R0 1056 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 TMEM206Q9H813 350 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 AGO4Q9HCK5 861 aaKnown RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 PPARGC1AQ9UBK2 798 aaKnown RBP13.41□□□□□ -0.26
RETREG3-201ENST00000309428 FBXO40Q9UH90 709 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 BTAF1O14981 1849 aa13.41□□□□□ -0.26
RETREG3-201ENST00000309428 NHSL1Q5SYE7 1610 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 PJA2O43164 708 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 RASSF9O75901 435 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 ITGA8P53708 1063 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 BASP1P80723 227 aaKnown RBP13.4□□□□□ -0.26
RETREG3-201ENST00000309428 COG7P83436 770 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 SPDYE2Q495Y8 402 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 CASC4Q6P4E1 433 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 SESTD1Q86VW0 696 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 RTKN2Q8IZC4 609 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 FBXL13Q8NEE6 735 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 RAB20Q9NX57 234 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 SUCLA2Q9P2R7 463 aaPredicted RBP13.4□□□□□ -0.26
RETREG3-201ENST00000309428 TBX20Q9UMR3 447 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 EXOC7Q9UPT5 735 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 CYP3A7P24462 503 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 NLRP11P59045 1033 aaKnown RBP13.4□□□□□ -0.26
RETREG3-201ENST00000309428 KLC1Q07866 573 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 ERMARDQ5T6L9 678 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 IZUMO3Q5VZ72 239 aa13.4□□□□□ -0.26
RETREG3-201ENST00000309428 ANO5Q75V66 913 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms