RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR54, Length 86 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR54snR54 YNL217WP40152 326 aa0.6□□□□□ -2.31
snR54snR54 YRB2P40517 327 aa0.6□□□□□ -2.31
snR54snR54 HAM1P47119 197 aaKnown RBP0.6□□□□□ -2.31
snR54snR54 SEI1Q06058 285 aa0.6□□□□□ -2.31
snR54snR54 YPL162CQ12042 273 aa0.6□□□□□ -2.31
snR54snR54 YBR063CP38083 404 aa0.59□□□□□ -2.31
snR54snR54 GAA1P39012 614 aa0.59□□□□□ -2.31
snR54snR54 PGD1P40356 397 aa0.59□□□□□ -2.31
snR54snR54 ICE2P40499 491 aa0.59□□□□□ -2.31
snR54snR54 AIF1P52923 378 aa0.59□□□□□ -2.31
snR54snR54 YER188C-AP0C0V2 99 aa0.58□□□□□ -2.32
snR54snR54 TMA19P35691 167 aaKnown RBP0.58□□□□□ -2.32
snR54snR54 VPS21P36017 210 aaKnown RBP0.58□□□□□ -2.32
snR54snR54 RRF1P38771 230 aa0.58□□□□□ -2.32
snR54snR54 YNR077CP53758 84 aa0.58□□□□□ -2.32
snR54snR54 SDO1Q07953 250 aaKnown RBP0.58□□□□□ -2.32
snR54snR54 MSB2P32334 1306 aa0.58□□□□□ -2.32
snR54snR54 PDR18P53756 1333 aa0.58□□□□□ -2.32
snR54snR54 MET5P47169 1442 aa0.57□□□□□ -2.32
snR54snR54 AQY2P0CD90 149 aa0.57□□□□□ -2.32
snR54snR54 HUA1P40325 198 aa0.57□□□□□ -2.32
snR54snR54 GPI8P49018 411 aa0.57□□□□□ -2.32
snR54snR54 RPL37BP51402 88 aaKnown RBP0.57□□□□□ -2.32
snR54snR54 SNU23Q12368 194 aaPredicted RBP0.57□□□□□ -2.32
snR54snR54 PSF1Q12488 208 aa0.57□□□□□ -2.32
snR54snR54 YPR170W-BP0C5R9 85 aa0.56□□□□□ -2.32
snR54snR54 TCP1P12612 559 aaKnown RBP0.56□□□□□ -2.32
snR54snR54 NSP1P14907 823 aaKnown RBP0.56□□□□□ -2.32
snR54snR54 YML096WQ04489 525 aa0.56□□□□□ -2.32
snR54snR54 SSQ1Q05931 657 aaPredicted RBP0.56□□□□□ -2.32
snR54snR54 ANT1Q06497 328 aa0.56□□□□□ -2.32
snR54snR54 YLR126CQ12288 251 aa0.56□□□□□ -2.32
snR54snR54 KDX1P36005 433 aa0.55□□□□□ -2.32
snR54snR54 YKL075CP36083 450 aa0.55□□□□□ -2.32
snR54snR54 RIB1P38066 345 aa0.55□□□□□ -2.32
snR54snR54 PET100P38958 111 aa0.55□□□□□ -2.32
snR54snR54 YMR144WP40214 342 aaKnown RBP0.55□□□□□ -2.32
snR54snR54 ILM1P47155 203 aa0.55□□□□□ -2.32
snR54snR54 CSM4Q08955 156 aa0.55□□□□□ -2.32
snR54snR54 MSF1P08425 469 aa0.54□□□□□ -2.32
snR54snR54 YEL067CP39978 195 aa0.54□□□□□ -2.32
snR54snR54 RSM25P40496 264 aa0.54□□□□□ -2.32
snR54snR54 DOC1P53068 250 aa0.54□□□□□ -2.32
snR54snR54 MSH5Q12175 901 aa0.54□□□□□ -2.32
snR54snR54 PRP8P33334 2413 aaKnown RBP0.54□□□□□ -2.32
snR54snR54 RIO2P40160 425 aaKnown RBP0.53□□□□□ -2.32
snR54snR54 MPP6P53725 186 aaPredicted RBP0.53□□□□□ -2.32
snR54snR54 BTS1Q12051 335 aa0.53□□□□□ -2.32
snR54snR54 YOR029WQ12243 111 aa0.53□□□□□ -2.32
snR54snR54 REP2P03872 296 aa0.52□□□□□ -2.33
snR54snR54 IRC22P40006 225 aa0.52□□□□□ -2.33
snR54snR54 PEX17P40155 199 aa0.52□□□□□ -2.33
snR54snR54 SAY1P53324 424 aa0.52□□□□□ -2.33
snR54snR54 ABF2Q02486 183 aa0.52□□□□□ -2.33
snR54snR54 YNL146C-AQ3E7Z1 64 aa0.52□□□□□ -2.33
snR54snR54 FAS1P07149 2051 aaKnown RBP0.52□□□□□ -2.33
snR54snR54 SRY1P36007 326 aa0.51□□□□□ -2.33
snR54snR54 TVP38P36164 337 aa0.51□□□□□ -2.33
snR54snR54 ERJ5P43613 295 aaPredicted RBP0.51□□□□□ -2.33
snR54snR54 OM45P16547 393 aa0.5□□□□□ -2.33
snR54snR54 MRPS28P21771 286 aa0.5□□□□□ -2.33
snR54snR54 YET1P35723 206 aa0.5□□□□□ -2.33
snR54snR54 URA8P38627 578 aaPredicted RBP0.5□□□□□ -2.33
snR54snR54 YNL010WP53981 241 aaKnown RBP0.5□□□□□ -2.33
snR54snR54 YOL107WQ12239 342 aa0.5□□□□□ -2.33
snR54snR54 TUS1Q06412 1307 aa0.49□□□□□ -2.33
snR54snR54 HOC1P47124 396 aa0.49□□□□□ -2.33
snR54snR54 YJR149WP47177 404 aa0.49□□□□□ -2.33
snR54snR54 POP3P53833 195 aaPredicted RBP0.49□□□□□ -2.33
snR54snR54 AIM36Q03798 255 aa0.49□□□□□ -2.33
snR54snR54 PBN1P25580 416 aa0.48□□□□□ -2.33
snR54snR54 NOP13P53883 403 aaKnown RBP RIP-Chip data0.48□□□□□ -2.33not detected
snR54snR54 GAS3Q03655 524 aa0.48□□□□□ -2.33
snR54snR54 YMD8Q03697 442 aa0.48□□□□□ -2.33
snR54snR54 LPP1Q04396 274 aa0.48□□□□□ -2.33
snR54snR54 YDL180WQ12301 547 aa0.48□□□□□ -2.33
snR54snR54 YLR156WP0CE96 114 aa0.47□□□□□ -2.33
snR54snR54 YLR159WP0CE97 114 aa0.47□□□□□ -2.33
snR54snR54 YLR161WP0CE98 114 aa0.47□□□□□ -2.33
snR54snR54 ATG22P25568 528 aa0.47□□□□□ -2.33
snR54snR54 TFC1P32367 649 aa0.47□□□□□ -2.33
snR54snR54 SRB4P32569 687 aa0.47□□□□□ -2.33
snR54snR54 UMP1P38293 148 aa0.47□□□□□ -2.33
snR54snR54 EAF6P47128 113 aa0.47□□□□□ -2.33
snR54snR54 TRM9P49957 279 aa0.47□□□□□ -2.33
snR54snR54 KNH1P50112 268 aa0.47□□□□□ -2.33
snR54snR54 SNZ1Q03148 297 aa0.47□□□□□ -2.33
snR54snR54 YMR007WQ03675 126 aa0.47□□□□□ -2.33
snR54snR54 SIR2P06700 562 aa0.46□□□□□ -2.34
snR54snR54 YHR212W-AP0CX91 67 aa0.46□□□□□ -2.34
snR54snR54 MRPL17P36528 281 aa0.46□□□□□ -2.34
snR54snR54 DOG2P38773 246 aa0.46□□□□□ -2.34
snR54snR54 SOK1P40317 901 aa0.46□□□□□ -2.34
snR54snR54 CUS2P53830 285 aaPredicted RBP0.46□□□□□ -2.34
snR54snR54 YIL177CP40434 1758 aa0.45□□□□□ -2.34
snR54snR54 YJL225CP40889 1758 aa0.45□□□□□ -2.34
snR54snR54 RPT5P33297 434 aaKnown RBP0.45□□□□□ -2.34
snR54snR54 POP4P38336 279 aa0.45□□□□□ -2.34
snR54snR54 BNA6P43619 295 aa0.45□□□□□ -2.34
snR54snR54 MCM22P47167 239 aa0.45□□□□□ -2.34
Retrieved 100 of 5,963 RNA–protein pairs in 86.1 ms