RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	RPL43A	P0CX25	92 aa	Known RBP	3.78	□□□□□ -1.8
RRP40	YOL142W	RPL43B	P0CX26	92 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	PPA2	P28239	310 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	3.78	□□□□□ -1.8	not detected
RRP40	YOL142W	COS9	P36034	407 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	MLH1	P38920	769 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	IPT1	P38954	527 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	FET3	P38993	636 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	KRE29	P40026	464 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	PDS1	P40316	373 aa	Predicted RBP	3.78	□□□□□ -1.8
RRP40	YOL142W	NQM1	P53228	333 aa	Predicted RBP	3.78	□□□□□ -1.8
RRP40	YOL142W	PGA1	P53896	198 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	API2	Q04413	109 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	NIP7	Q08962	181 aa	Known RBP	3.78	□□□□□ -1.8
RRP40	YOL142W	YDL012C	Q12489	107 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	SFG1	Q12507	346 aa		3.78	□□□□□ -1.8
RRP40	YOL142W	SSA3	P09435	649 aa	Known RBP	3.77	□□□□□ -1.81
RRP40	YOL142W	PHO80	P20052	293 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	ATG15	P25641	520 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	KRE6	P32486	720 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	MRPL39	P36533	70 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	MAL32	P38158	584 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	RPS20	P38701	121 aa	Known RBP	3.77	□□□□□ -1.81
RRP40	YOL142W	GOS1	P38736	223 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	MSS2	P40990	351 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	BRR6	P53062	197 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	MAL12	P53341	584 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	RRN9	P53437	365 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	TAZ1	Q06510	381 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	RNH203	Q12338	110 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	HMS1	Q12398	434 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	TRM10	Q12400	293 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	YCR024C-B	Q3E7Z8	88 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	MED11	Q99278	115 aa		3.77	□□□□□ -1.81
RRP40	YOL142W	OPI3	P05375	206 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	MET2	P08465	486 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	IDP1	P21954	428 aa	Known RBP	3.76	□□□□□ -1.81
RRP40	YOL142W	PUP2	P32379	260 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	MID2	P36027	376 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	AVT6	P40074	448 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	SNZ1	Q03148	297 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	YHR214C-E	Q8TGK0	99 aa		3.76	□□□□□ -1.81
RRP40	YOL142W	PDE2	P06776	526 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	CDC50	P25656	391 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	CAM1	P29547	415 aa	Known RBP	3.75	□□□□□ -1.81
RRP40	YOL142W	IES6	P32617	166 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	SUR1	P33300	382 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	YBR063C	P38083	404 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	QDR3	P38227	689 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	YER184C	P39961	794 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	YDR102C	Q03864	110 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	BNA7	Q04066	261 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	YLR173W	Q06247	608 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	MIM1	Q08176	113 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	YDL180W	Q12301	547 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	PCL9	Q12477	304 aa		3.75	□□□□□ -1.81
RRP40	YOL142W	FOL3	Q12676	427 aa	Predicted RBP	3.75	□□□□□ -1.81
RRP40	YOL142W	HEM4	P06174	275 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	KIN28	P06242	306 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	VPH2	P32341	215 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	VMA6	P32366	345 aa	Known RBP	3.74	□□□□□ -1.81
RRP40	YOL142W	VMA8	P32610	256 aa	Known RBP	3.74	□□□□□ -1.81
RRP40	YOL142W	ECT1	P33412	323 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	YHR035W	P38769	630 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	SEN34	P39707	275 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	ADO1	P47143	340 aa	Known RBP	3.74	□□□□□ -1.81
RRP40	YOL142W	PMT5	P52867	743 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	MNT4	P53745	580 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	CIK1	Q01649	594 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	NUP49	Q02199	472 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	PRP3	Q03338	469 aa	Predicted RBP	3.74	□□□□□ -1.81
RRP40	YOL142W	CTS2	Q06350	511 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	YDL114W	Q07530	308 aa		3.74	□□□□□ -1.81
RRP40	YOL142W	CDC36	P06100	191 aa	Predicted RBP	3.73	□□□□□ -1.81
RRP40	YOL142W	RPL12A	P0CX53	165 aa	Known RBP	3.73	□□□□□ -1.81
RRP40	YOL142W	RPL12B	P0CX54	165 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	GIT1	P25346	518 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	ECM4	P36156	370 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	DTR1	P38125	572 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	GPX2	P38143	162 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	SHE1	P38200	338 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	YHL037C	P38733	133 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	PFS2	P42841	465 aa	Known RBP	3.73	□□□□□ -1.81
RRP40	YOL142W	YFL051C	P43552	160 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	TMA20	P89886	181 aa	Predicted RBP	3.73	□□□□□ -1.81
RRP40	YOL142W	MRPS16	Q02608	121 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	PET191	Q02772	108 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	RAF1	Q06891	181 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	FCY22	Q12119	530 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	YOP1	Q12402	180 aa		3.73	□□□□□ -1.81
RRP40	YOL142W	DBF2	P22204	572 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	MRPS5	P33759	307 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	SRP102	P36057	244 aa	Predicted RBP	3.72	□□□□□ -1.81
RRP40	YOL142W	RIO2	P40160	425 aa	Known RBP	3.72	□□□□□ -1.81
RRP40	YOL142W	VOA1	P53262	265 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	SAY1	P53324	424 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	ASI3	P53983	676 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	SPO19	Q03029	223 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	AIM36	Q03798	255 aa		3.72	□□□□□ -1.81
RRP40	YOL142W	YMR315W	Q04869	349 aa	Known RBP	3.72	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 114 ms