RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	YDR415C	Q04033	374 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS1	YKR001C	CUE4	Q04201	117 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS1	YKR001C	RPC11	Q04307	110 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS1	YKR001C	MRX8	Q05473	314 aa		4.9	□□□□□ -1.63
VPS1	YKR001C	TEN1	Q07921	160 aa		4.9	□□□□□ -1.63
VPS1	YKR001C	HNT3	Q08702	217 aa		4.9	□□□□□ -1.63
VPS1	YKR001C	SNX3	Q08826	162 aa	Known RBP	4.9	□□□□□ -1.63
VPS1	YKR001C	PFA4	Q12006	378 aa		4.9	□□□□□ -1.63
VPS1	YKR001C	PRP46	Q12417	451 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS1	YKR001C	POM34	Q12445	299 aa		4.9	□□□□□ -1.63
VPS1	YKR001C	DET1	Q99288	334 aa	Known RBP	4.9	□□□□□ -1.63
VPS1	YKR001C	YCL002C	P25565	263 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	MRPL49	P40858	161 aa	Predicted RBP	4.89	□□□□□ -1.63
VPS1	YKR001C	AAD14	P42884	376 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	GLO1	P50107	326 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	COX18	P53239	316 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	RSM23	Q01163	450 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	YMR315W	Q04869	349 aa	Known RBP	4.89	□□□□□ -1.63
VPS1	YKR001C	YPR109W	Q06104	294 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	THI20	Q08224	551 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	ISU2	Q12056	156 aa		4.89	□□□□□ -1.63
VPS1	YKR001C	TY1A-NL1	Q12391	440 aa	Known RBP	4.89	□□□□□ -1.63
VPS1	YKR001C	SOD2	P00447	233 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	SUC2	P00724	532 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
VPS1	YKR001C	YPS1	P32329	569 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	MRP20	P32387	263 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	EMP24	P32803	203 aa	Known RBP	4.88	□□□□□ -1.63
VPS1	YKR001C	SRY1	P36007	326 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	LSM2	P38203	95 aa	Known RBP	4.88	□□□□□ -1.63
VPS1	YKR001C	DBP8	P38719	431 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	FMP52	P40008	231 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	AYR1	P40471	297 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	SNM1	P40993	198 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	CIS3	P47001	227 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	ALG13	P53178	202 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	MSO1	P53604	210 aa	Known RBP	4.88	□□□□□ -1.63
VPS1	YKR001C	YLR050C	Q12155	161 aa	Known RBP	4.88	□□□□□ -1.63
VPS1	YKR001C	ISD11	Q6Q560	94 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	STE7	P06784	515 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	YPR170W-B	P0C5R9	85 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	SNF4	P12904	322 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	FMT1	P32785	401 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	MRPL36	P36531	177 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	MOH1	P38191	138 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	YBR096W	P38256	230 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	SRP68	P38687	599 aa	Known RBP	4.88	□□□□□ -1.63
VPS1	YKR001C	MEP2	P41948	499 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	PUS2	P53167	370 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	CLD1	P53264	445 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	MTM1	P53320	366 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	ASA1	Q06822	443 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	RPS21B	Q3E754	87 aa	Known RBP	4.88	□□□□□ -1.63
VPS1	YKR001C	COA6	Q3E846	104 aa		4.88	□□□□□ -1.63
VPS1	YKR001C	AAC1	P04710	309 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	ADH3	P07246	375 aa	Known RBP	4.87	□□□□□ -1.63
VPS1	YKR001C	FCY2	P17064	533 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	ATG15	P25641	520 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	BUB2	P26448	306 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS1	YKR001C	SNC2	P33328	115 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	MRPL28	P36527	147 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	GEP4	P38812	185 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	EMC4	P53073	190 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	CDH1	P53197	566 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	LRS4	Q04087	347 aa	Known RBP	4.87	□□□□□ -1.63
VPS1	YKR001C	ASR1	Q06834	288 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	COQ10	Q08058	207 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	PLB3	Q08108	686 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	MHT1	Q12525	324 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	YML003W	P0CF16	290 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	BGL2	P15703	313 aa	Known RBP	4.87	□□□□□ -1.63
VPS1	YKR001C	GPI12	P23797	304 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	SLM6	P38343	150 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	RPS20	P38701	121 aa	Known RBP	4.87	□□□□□ -1.63
VPS1	YKR001C	BUD13	P46947	266 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS1	YKR001C	AAH1	P53909	347 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	SUR7	P54003	302 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	YMR130W	Q04223	302 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	GPI11	Q06636	219 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	YPR202W	Q08993	238 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	RAX2	Q12465	1220 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	YPR145C-A	Q2V2P0	78 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	YIL134C-A	Q45U18	67 aa		4.87	□□□□□ -1.63
VPS1	YKR001C	YKR104W	P0CE69	306 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	TOA2	P32774	122 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	PMU1	P36069	295 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	ATG8	P38182	117 aa	RIP-Chip data	4.86	□□□□□ -1.63	not detected
VPS1	YKR001C	TSL1	P38427	1098 aa	Known RBP	4.86	□□□□□ -1.63
VPS1	YKR001C	MDM31	P38880	579 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	YIP5	P53108	310 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	YMR320W	Q04897	101 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	ECI1	Q05871	280 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	GRX8	Q05926	109 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	PEX11	Q12462	236 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	MEC1	P38111	2368 aa		4.86	□□□□□ -1.63
VPS1	YKR001C	HIS1	P00498	297 aa	Known RBP	4.85	□□□□□ -1.63
VPS1	YKR001C	RPB3	P16370	318 aa	Known RBP	4.85	□□□□□ -1.63
VPS1	YKR001C	ERS1	P17261	260 aa		4.85	□□□□□ -1.63
VPS1	YKR001C	RPB8	P20436	146 aa		4.85	□□□□□ -1.63
VPS1	YKR001C	FEN2	P25621	512 aa	Known RBP	4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 21.8 ms