RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C YNL217WP40152 326 aa0.92□□□□□ -2.26
SNU56YDR240C ABF2Q02486 183 aa0.92□□□□□ -2.26
SNU56YDR240C SSQ1Q05931 657 aaPredicted RBP0.92□□□□□ -2.26
SNU56YDR240C QCR8P08525 94 aa0.92□□□□□ -2.26
SNU56YDR240C RPL27BP0C2H7 136 aaKnown RBP0.92□□□□□ -2.26
SNU56YDR240C YKL075CP36083 450 aa0.92□□□□□ -2.26
SNU56YDR240C MEP1P40260 492 aa0.92□□□□□ -2.26
SNU56YDR240C CAT5P41735 233 aa0.92□□□□□ -2.26
SNU56YDR240C UBC7Q02159 165 aa0.92□□□□□ -2.26
SNU56YDR240C ANT1Q06497 328 aa0.92□□□□□ -2.26
SNU56YDR240C RPS5P26783 225 aaKnown RBP0.91□□□□□ -2.26
SNU56YDR240C MRPL37P36532 105 aa0.91□□□□□ -2.26
SNU56YDR240C YER076CP40049 302 aa0.91□□□□□ -2.26
SNU56YDR240C SDO1Q07953 250 aaKnown RBP0.91□□□□□ -2.26
SNU56YDR240C YMR144WP40214 342 aaKnown RBP0.9□□□□□ -2.27
SNU56YDR240C YML096WQ04489 525 aa0.9□□□□□ -2.27
SNU56YDR240C PSF1Q12488 208 aa0.9□□□□□ -2.27
SNU56YDR240C MSF1P08425 469 aa0.89□□□□□ -2.27
SNU56YDR240C AIF1P52923 378 aa0.89□□□□□ -2.27
SNU56YDR240C DID2P69771 204 aa0.89□□□□□ -2.27
SNU56YDR240C YML108WQ03759 105 aa0.89□□□□□ -2.27
SNU56YDR240C MSA1Q08471 629 aa0.89□□□□□ -2.27
SNU56YDR240C YPL229WQ99395 206 aa0.89□□□□□ -2.27
SNU56YDR240C BIG1P38813 335 aa0.88□□□□□ -2.27
SNU56YDR240C GAA1P39012 614 aa0.88□□□□□ -2.27
SNU56YDR240C DOC1P53068 250 aa0.88□□□□□ -2.27
SNU56YDR240C SAY1P53324 424 aa0.88□□□□□ -2.27
SNU56YDR240C MPP6P53725 186 aaPredicted RBP0.88□□□□□ -2.27
SNU56YDR240C BTS1Q12051 335 aa0.88□□□□□ -2.27
SNU56YDR240C MET5P47169 1442 aa0.87□□□□□ -2.27
SNU56YDR240C TVP38P36164 337 aa0.87□□□□□ -2.27
SNU56YDR240C CUS2P53830 285 aaPredicted RBP0.87□□□□□ -2.27
SNU56YDR240C YNL010WP53981 241 aaKnown RBP0.87□□□□□ -2.27
SNU56YDR240C TRM12Q04235 462 aa0.87□□□□□ -2.27
SNU56YDR240C YER188C-AP0C0V2 99 aa0.86□□□□□ -2.27
SNU56YDR240C TFC1P32367 649 aa0.86□□□□□ -2.27
SNU56YDR240C VPS21P36017 210 aaKnown RBP0.86□□□□□ -2.27
SNU56YDR240C RIB1P38066 345 aa0.86□□□□□ -2.27
SNU56YDR240C RIO2P40160 425 aaKnown RBP0.86□□□□□ -2.27
SNU56YDR240C YRB2P40517 327 aa0.86□□□□□ -2.27
SNU56YDR240C RPL37AP49166 88 aaKnown RBP0.86□□□□□ -2.27
SNU56YDR240C SPG3Q04398 127 aaPredicted RBP0.86□□□□□ -2.27
SNU56YDR240C REP2P03872 296 aa0.86□□□□□ -2.27
SNU56YDR240C OM45P16547 393 aa0.86□□□□□ -2.27
SNU56YDR240C MRPS28P21771 286 aa0.86□□□□□ -2.27
SNU56YDR240C YET1P35723 206 aa0.86□□□□□ -2.27
SNU56YDR240C YMR007WQ03675 126 aa0.86□□□□□ -2.27
SNU56YDR240C MSH5Q12175 901 aa0.86□□□□□ -2.27
SNU56YDR240C YDL180WQ12301 547 aa0.86□□□□□ -2.27
SNU56YDR240C FAS1P07149 2051 aaKnown RBP0.86□□□□□ -2.27
SNU56YDR240C YMD8Q03697 442 aa0.85□□□□□ -2.27
SNU56YDR240C LSO2Q3E772 92 aaKnown RBP0.85□□□□□ -2.27
SNU56YDR240C MSB2P32334 1306 aa0.84□□□□□ -2.27
SNU56YDR240C UMP1P38293 148 aa0.84□□□□□ -2.28
SNU56YDR240C PEX17P40155 199 aa0.84□□□□□ -2.28
SNU56YDR240C MCM22P47167 239 aa0.84□□□□□ -2.28
SNU56YDR240C YLR126CQ12288 251 aa0.84□□□□□ -2.28
SNU56YDR240C YHR139C-AO13536 103 aa0.83□□□□□ -2.28
SNU56YDR240C YPR170W-BP0C5R9 85 aa0.83□□□□□ -2.28
SNU56YDR240C IRC22P40006 225 aa0.83□□□□□ -2.28
SNU56YDR240C ERJ5P43613 295 aaPredicted RBP0.83□□□□□ -2.28
SNU56YDR240C HOC1P47124 396 aa0.83□□□□□ -2.28
SNU56YDR240C POP3P53833 195 aaPredicted RBP0.83□□□□□ -2.28
SNU56YDR240C NOP13P53883 403 aaKnown RBP RIP-Chip data0.83□□□□□ -2.28not detected
SNU56YDR240C YNL146C-AQ3E7Z1 64 aa0.83□□□□□ -2.28
SNU56YDR240C PDR18P53756 1333 aa0.82□□□□□ -2.28
SNU56YDR240C SRB4P32569 687 aa0.82□□□□□ -2.28
SNU56YDR240C YJR149WP47177 404 aa0.82□□□□□ -2.28
SNU56YDR240C KRE28Q04431 385 aa0.82□□□□□ -2.28
SNU56YDR240C SNC2P33328 115 aa0.81□□□□□ -2.28
SNU56YDR240C YBR209WP38311 105 aa0.81□□□□□ -2.28
SNU56YDR240C YEL067CP39978 195 aa0.81□□□□□ -2.28
SNU56YDR240C RTT105P40063 208 aa0.81□□□□□ -2.28
SNU56YDR240C YNR077CP53758 84 aa0.81□□□□□ -2.28
SNU56YDR240C YDR248CQ03786 193 aa0.81□□□□□ -2.28
SNU56YDR240C TCP1P12612 559 aaKnown RBP0.8□□□□□ -2.28
SNU56YDR240C ATG22P25568 528 aa0.8□□□□□ -2.28
SNU56YDR240C POP4P38336 279 aa0.8□□□□□ -2.28
SNU56YDR240C DOG2P38773 246 aa0.8□□□□□ -2.28
SNU56YDR240C HUA1P40325 198 aa0.8□□□□□ -2.28
SNU56YDR240C LPP1Q04396 274 aa0.8□□□□□ -2.28
SNU56YDR240C FSF1Q12029 327 aaKnown RBP0.8□□□□□ -2.28
SNU56YDR240C AQY2P0CD90 149 aa0.8□□□□□ -2.28
SNU56YDR240C PBN1P25580 416 aa0.8□□□□□ -2.28
SNU56YDR240C URA8P38627 578 aaPredicted RBP0.8□□□□□ -2.28
SNU56YDR240C MRPL50P53724 139 aa0.8□□□□□ -2.28
SNU56YDR240C SWP1Q02795 286 aa0.8□□□□□ -2.28
SNU56YDR240C SNZ1Q03148 297 aa0.8□□□□□ -2.28
SNU56YDR240C YOR029WQ12243 111 aa0.8□□□□□ -2.28
SNU56YDR240C TSC3Q3E790 80 aa0.8□□□□□ -2.28
SNU56YDR240C SHE2P36068 246 aaKnown RBP RIP-Chip data0.79□□□□□ -2.28not detected
SNU56YDR240C MRPL28P36527 147 aa0.79□□□□□ -2.28
SNU56YDR240C KNH1P50112 268 aa0.79□□□□□ -2.28
SNU56YDR240C RPL37BP51402 88 aaKnown RBP0.79□□□□□ -2.28
SNU56YDR240C GAS3Q03655 524 aa0.79□□□□□ -2.28
SNU56YDR240C KAP95Q06142 861 aaKnown RBP0.79□□□□□ -2.28
SNU56YDR240C BCY1P07278 416 aaKnown RBP0.78□□□□□ -2.28
SNU56YDR240C YLR156WP0CE96 114 aa0.78□□□□□ -2.28
SNU56YDR240C YLR159WP0CE97 114 aa0.78□□□□□ -2.28
SNU56YDR240C YLR161WP0CE98 114 aa0.78□□□□□ -2.28
Retrieved 100 of 5,963 RNA–protein pairs in 36.2 ms