RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 POP1Q99575 1024 aaKnown RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 TRAIPQ9BWF2 469 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 TRIM6Q9C030 488 aaPredicted RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 LZTFL1Q9NQ48 299 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 CNTN3Q9P232 1028 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 NAGPAQ9UK23 515 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 PHF24Q9UPV7 400 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 PIN4Q9Y237 131 aaKnown RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 NCANO14594 1321 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 A0A087X0T9 212 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 A0A0U1RQG5 324 aaPredicted RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 KBTBD13C9JR72 458 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 LRRN2O75325 713 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 FAM228BP0C875 321 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 GZMAP12544 262 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 MAGEA1P43355 309 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 CHMP4BP1P59074 171 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 GNG11P61952 73 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 IRX5P78411 483 aaPredicted RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 ARID5AQ03989 594 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 GFPT1Q06210 699 aaPredicted RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 MGAT3Q09327 533 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 TRPC3Q13507 836 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 ITGA7Q13683 1181 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 ARHGAP44Q17R89 818 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 ZNF699Q32M78 642 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 FAM26DQ5JW98 314 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 LHX8Q68G74 356 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 ALKBH5Q6P6C2 394 aaKnown RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 TRIM72Q6ZMU5 477 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 CEP120Q8N960 986 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 OR5B17Q8NGF7 314 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 SLC30A5Q8TAD4 765 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 SECISBP2LQ93073 1101 aaKnown RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 CPB2Q96IY4 423 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 ZNF668Q96K58 619 aaPredicted RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLN3-248ENST00000636355 L2HGDHQ9H9P8 463 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 ADAMTS1Q9UHI8 967 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 DNAI1Q9UI46 699 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 NOCTQ9UK39 431 aaKnown RBP11.36□□□□□ -0.59
CLN3-248ENST00000636355 PCDHB2Q9Y5E7 798 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 CDY2AQ9Y6F7 541 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 MYH10P35580 1976 aa11.36□□□□□ -0.59
CLN3-248ENST00000636355 PCNTO95613 3336 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 CTAGE9A4FU28 777 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 FOXN3O00409 490 aaPredicted RBP11.35□□□□□ -0.59
CLN3-248ENST00000636355 DNM1LO00429 736 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 GPR182O15218 404 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 NPTXRO95502 500 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 CAPN2P17655 700 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 CASQ1P31415 396 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 TFAMQ00059 246 aaKnown RBP11.35□□□□□ -0.59
CLN3-248ENST00000636355 CDR2Q01850 454 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 CYP27A1Q02318 531 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 TCEAL1Q15170 157 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 PTGISQ16647 500 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 SLC10A6Q3KNW5 377 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 XKR4Q5GH76 650 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 FAM47CQ5HY64 1035 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 SYT10Q6XYQ8 523 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 FAM228AQ86W67 206 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 LRRC52Q8N7C0 313 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 UBR7Q8N806 425 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 OLIG1Q8TAK6 271 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 TMEM40Q8WWA1 233 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 NOX5Q96PH1 765 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 PPP1R16BQ96T49 567 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 BCO2Q9BYV7 579 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 XYLT2Q9H1B5 865 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 CYP3A43Q9HB55 503 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 PAK6Q9NQU5 681 aaPredicted RBP11.35□□□□□ -0.59
CLN3-248ENST00000636355 GINS2Q9Y248 185 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 TRIM17Q9Y577 477 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 PTCH2Q9Y6C5 1203 aa11.35□□□□□ -0.59
CLN3-248ENST00000636355 A0A1W2PQ45 241 aaPredicted RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 A0A1W2PQY0 241 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 LACTBL1A8MY62 500 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 DDX3XO00571 662 aaKnown RBP eCLIP11.34□□□□□ -0.593e-8■■■□□ 15.1
CLN3-248ENST00000636355 TACC1O75410 805 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 RPS6KA5O75582 802 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 CD4P01730 458 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 NFICP08651 508 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 H2AFZP0C0S5 128 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 TMEM253P0C7T8 217 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 KCNE1P15382 129 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 CYP3A5P20815 502 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 GTF2F1P35269 517 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLN3-248ENST00000636355 ZNF132P52740 706 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 HADHBP55084 474 aaKnown RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 ZNF200P98182 395 aaPredicted RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 TMEM62Q0P6H9 643 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 SEZ6Q53EL9 994 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 LMBRD2Q68DH5 695 aaPredicted RBP11.34□□□□□ -0.59
CLN3-248ENST00000636355 JADE1Q6IE81 842 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 ALKAL1Q6UXT8 129 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 H2AFVQ71UI9 128 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 C1orf127Q8N9H9 656 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 BEST2Q8NFU1 509 aa11.34□□□□□ -0.59
CLN3-248ENST00000636355 CAGE1Q8TC20 777 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms