RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CMASQ8NFW8 434 aaPredicted RBP13.79□□□□□ -0.2
PNKP-217ENST00000625216 FAM200AQ8TCP9 573 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 EDAQ92838 391 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 RHOBTB2Q9BYZ6 727 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 CDT1Q9H211 546 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 PLEKHA4Q9H4M7 779 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 GRPEL1Q9HAV7 217 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 SLC38A7Q9NVC3 462 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 MUTYHQ9UIF7 546 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 USTQ9Y2C2 406 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 C5orf42Q9H799 3197 aa13.79□□□□□ -0.2
PNKP-217ENST00000625216 SMIM28A0A1B0GU29 152 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 CASTOR2A6NHX0 329 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 SPDYE4A6NLX3 237 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 F8W810 466 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 TMEM189-UBE2V1I3L0A0 370 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 RHOBTB3O94955 611 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 GLUD1P00367 558 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 MAPTP10636 758 aaKnown RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 CD44P16070 742 aaKnown RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 CACNB1Q02641 598 aaPredicted RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 EHHADHQ08426 723 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 RAD51AP2Q09MP3 1159 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 IQCB1Q15051 598 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 ALKAL1Q6UXT8 129 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 UNC13DQ70J99 1090 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 SMYD4Q8IYR2 804 aaPredicted RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 PLCD3Q8N3E9 789 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 C12orf76Q8N812 135 aaPredicted RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 RIN2Q8WYP3 895 aaPredicted RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 DDX27Q96GQ7 796 aaKnown RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 ACAP3Q96P50 834 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 PPP1R10Q96QC0 940 aaKnown RBP13.78□□□□□ -0.2
PNKP-217ENST00000625216 TTPALQ9BTX7 342 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 LRRC27Q9C0I9 530 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 POMKQ9H5K3 350 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 RMND1Q9NWS8 449 aa13.78□□□□□ -0.2
PNKP-217ENST00000625216 FAM86C2PA6NEL3 165 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 ABLIM1O14639 778 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 CLDN3O15551 220 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 TRAPPC3O43617 180 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 KIF4AO95239 1232 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 KCNE1P15382 129 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 ZNF165P49910 485 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 ZNF131P52739 623 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 NCKAP1LP55160 1127 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 ZNF658Q5TYW1 1059 aaPredicted RBP13.77□□□□□ -0.21
PNKP-217ENST00000625216 FAM171A1Q5VUB5 890 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 TMC5Q6UXY8 1006 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 HAUS6Q7Z4H7 955 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 LUZP1Q86V48 1076 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 PIK3R5Q8WYR1 880 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 REEP2Q9BRK0 252 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 PAAF1Q9BRP4 392 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 PARVGQ9HBI0 331 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 EXOC1Q9NV70 894 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 HCN4Q9Y3Q4 1203 aa13.77□□□□□ -0.21
PNKP-217ENST00000625216 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.77□□□□□ -0.21
PNKP-217ENST00000625216 PVALEFA0A1B0GWK0 134 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 FRMD3A2A2Y4 597 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 B3GAT3O94766 335 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 FAM13AO94988 1023 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 PAPLNO95428 1278 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 KRT18P05783 430 aaKnown RBP13.76□□□□□ -0.21
PNKP-217ENST00000625216 IDEP14735 1019 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 MRE11P49959 708 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 ZXDAP98168 799 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 MCL1Q07820 350 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 KYAT1Q16773 422 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 LILRA6Q6PI73 481 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 BMP8AQ7Z5Y6 402 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 ZBTB33Q86T24 672 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 DHX40Q8IX18 779 aaKnown RBP13.76□□□□□ -0.21
PNKP-217ENST00000625216 ZDHHC14Q8IZN3 488 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 MYCT1Q8N699 235 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 AOPEPQ8N6M6 819 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 CEP120Q8N960 986 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 MLKLQ8NB16 471 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 KIAA0895Q8NCT3 520 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 RABGGTAQ92696 567 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 HPS3Q969F9 1004 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 BPIFA3Q9BQP9 254 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 CXCL16Q9H2A7 254 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 PLEKHA5Q9HAU0 1116 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 MAN1C1Q9NR34 630 aa13.76□□□□□ -0.21
PNKP-217ENST00000625216 CCDC195A0A1B0GUA6 201 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 PPP1R3GB7ZBB8 358 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 CAVIN2O95810 425 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 WEE2P0C1S8 567 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 RPL9P32969 192 aaKnown RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 CLCNKBP51801 687 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 OSTNP61366 133 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 NOLC1Q14978 699 aaKnown RBP eCLIP13.75□□□□□ -0.21
PNKP-217ENST00000625216 PTPN21Q16825 1174 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 UPP1Q16831 310 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 GLRA4Q5JXX5 417 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 RTP2Q5QGT7 225 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 TRIM67Q6ZTA4 783 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 OTOP3Q7RTS5 596 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms