RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 WDR18Q9BV38 432 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 SMCHD1A6NHR9 2005 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 PI4K2BG5E9Z4 385 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 GAS7O60861 476 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 NDUFB10O96000 172 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 CD58P19256 250 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 FASTKD3Q14CZ7 662 aaKnown RBP19.51■□□□□ 0.71
UPF1-210ENST00000600689 PKN2Q16513 984 aaKnown RBP19.51■□□□□ 0.71
UPF1-210ENST00000600689 TAF1BQ53T94 588 aaPredicted RBP19.51■□□□□ 0.71
UPF1-210ENST00000600689 STYK1Q6J9G0 422 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 UBN1Q9NPG3 1134 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.51■□□□□ 0.71
UPF1-210ENST00000600689 CLRN2A0PK11 232 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 ARHGEF35A5YM69 484 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 GAS8O95995 478 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 RALAP11233 206 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 CALB2P22676 271 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 CALRP27797 417 aaKnown RBP19.5■□□□□ 0.71
UPF1-210ENST00000600689 PTDSS1P48651 473 aaKnown RBP19.5■□□□□ 0.71
UPF1-210ENST00000600689 RASA3Q14644 834 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 PLEKHO2Q8TD55 490 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 C7orf43Q8WVR3 580 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 KREMEN1Q96MU8 473 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 TSC22D3Q99576 134 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 SYT15Q9BQS2 421 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 SERPINA10Q9UK55 444 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 CYP3A7-CYP3A51PA0A087WV96 503 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 TCP10L2B9ZVM9 353 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 ETS1P14921 441 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 CYP3A7P24462 503 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 YY1P25490 414 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 RFC5P40937 340 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 MXI1P50539 228 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 POLGP54098 1239 aaPredicted RBP19.5■□□□□ 0.71
UPF1-210ENST00000600689 TMEM63BQ5T3F8 832 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 CSRNP1Q96S65 589 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 RBM15Q96T37 977 aaKnown RBP eCLIP19.5■□□□□ 0.712e-7■■■□□ 16.3
UPF1-210ENST00000600689 FAM47DPA6NHR8 397 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 RPA3P35244 121 aaPredicted RBP19.5■□□□□ 0.71
UPF1-210ENST00000600689 FMO1Q01740 532 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 RNF220Q5VTB9 566 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 PASD1Q8IV76 773 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 CD101Q93033 1021 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 TMEM117Q9H0C3 514 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 DENND2DQ9H6A0 471 aaPredicted RBP19.5■□□□□ 0.71
UPF1-210ENST00000600689 GRID1Q9ULK0 1009 aa19.5■□□□□ 0.71
UPF1-210ENST00000600689 LRRD1A4D1F6 860 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 CDH16O75309 829 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 TPBGLP0DKB5 382 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 ECE1P42892 770 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 NBPF20Q3BBV1 942 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 TMEM179Q6ZVK1 233 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 LMNTD2Q8IXW0 634 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 GLIS1Q8NBF1 620 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 RNF217Q8TC41 542 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 STK32AQ8WU08 396 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 DCAF4Q8WV16 495 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 FIZ1Q96SL8 496 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 LUC7L3O95232 432 aaKnown RBP19.49■□□□□ 0.71
UPF1-210ENST00000600689 ITIH2P19823 946 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 POLE2P56282 527 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 CLUL1Q15846 466 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 ZYXQ15942 572 aaKnown RBP19.49■□□□□ 0.71
UPF1-210ENST00000600689 LRRC8CQ8TDW0 803 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 SEMA4DQ92854 862 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 ACSF2Q96CM8 615 aaPredicted RBP19.49■□□□□ 0.71
UPF1-210ENST00000600689 FAM20AQ96MK3 541 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 CCDC77Q9BR77 488 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 MRIQ9BWK5 157 aa19.49■□□□□ 0.71
UPF1-210ENST00000600689 ZNF646O15015 1829 aaPredicted RBP19.49■□□□□ 0.71
UPF1-210ENST00000600689 A0A1W2PPM1 405 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 INHBEP58166 350 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 P3H1Q32P28 736 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 MTDHQ86UE4 582 aaKnown RBP19.48■□□□□ 0.71
UPF1-210ENST00000600689 ANKMY2Q8IV38 441 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 KIFC3Q9BVG8 833 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 TRABDQ9H4I3 376 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 GPRC5CQ9NQ84 441 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 CYP39A1Q9NYL5 469 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 WHRNQ9P202 907 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 C10orf71Q711Q0 1435 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 A0A0G2JND7 137 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 MAPK13O15264 365 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 RAD17O75943 681 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 CCNB1P14635 433 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 IVDP26440 423 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 SLC1A5Q15758 541 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 HHATQ5VTY9 493 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 LMBRD2Q68DH5 695 aaPredicted RBP19.48■□□□□ 0.71
UPF1-210ENST00000600689 RNF43Q68DV7 783 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 ANKRD35Q8N283 1001 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 HSD17B14Q9BPX1 270 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 LRRC19Q9H756 370 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 CFAP69A5D8W1 941 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 C2orf71A6NGG8 1288 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 EIF3DO15371 548 aaKnown RBP eCLIP19.48■□□□□ 0.71
UPF1-210ENST00000600689 GGPS1O95749 300 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 KRT10P13645 584 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 PSMC4P43686 418 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 EN1Q05925 392 aaPredicted RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms