RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PSMD5Q16401 504 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 ZBTB41Q5SVQ8 909 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 RARS2Q5T160 578 aaKnown RBP17.64■□□□□ 0.41
TRIM28-206ENST00000595974 CD300LGQ6UXG3 332 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 CEP57Q86XR8 500 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 POMGNT1Q8WZA1 660 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 KIF12Q96FN5 646 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 RIPOR3Q96MK2 946 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 C7orf25Q9BPX7 421 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 SCAND2PQ9GZW5 306 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-206ENST00000595974 MAN1C1Q9NR34 630 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 AGO2Q9UKV8 859 aaKnown RBP17.64■□□□□ 0.41
TRIM28-206ENST00000595974 KCNH3Q9ULD8 1083 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 UBQLN1Q9UMX0 589 aaKnown RBP17.64■□□□□ 0.41
TRIM28-206ENST00000595974 LACTBL1A8MY62 500 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 TISP43B9A030 160 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 CYP3A5P20815 502 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 LRPAP1P30533 357 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 KCNA1Q09470 495 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 PRSS55Q6UWB4 352 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-206ENST00000595974 CEP57L1Q8IYX8 460 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 LNX1Q8TBB1 728 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-206ENST00000595974 HDAC7Q8WUI4 952 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 FGFBP2Q9BYJ0 223 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 PLEKHA4Q9H4M7 779 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 TMEM206Q9H813 350 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 TUBGCP4Q9UGJ1 667 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 NUB1Q9Y5A7 615 aa17.63■□□□□ 0.41
TRIM28-206ENST00000595974 LOC730098B7Z3J9 87 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 RPL17P18621 184 aaKnown RBP17.62■□□□□ 0.41
TRIM28-206ENST00000595974 CMA1P23946 247 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 BRCC3P46736 316 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 ZBTB6Q15916 424 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 C15orf39Q6ZRI6 1047 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 ANKS3Q6ZW76 656 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 UNC13DQ70J99 1090 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 SYCP3Q8IZU3 236 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 C12orf76Q8N812 135 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-206ENST00000595974 CMASQ8NFW8 434 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-206ENST00000595974 CHAMP1Q96JM3 812 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 ASB7Q9H672 318 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 MTRRQ9UBK8 725 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 USP25Q9UHP3 1055 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 DERAQ9Y315 318 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 SCN1AP35498 2009 aa17.62■□□□□ 0.41
TRIM28-206ENST00000595974 SYN3O14994 580 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 EIF3DO15371 548 aaKnown RBP eCLIP17.61■□□□□ 0.41
TRIM28-206ENST00000595974 TGM5O43548 720 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 SLFN14P0C7P3 912 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 PFKFB1P16118 471 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 GARTP22102 1010 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 IGFBP6P24592 240 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-206ENST00000595974 TKTP29401 623 aaKnown RBP17.61■□□□□ 0.41
TRIM28-206ENST00000595974 ADSSP30520 456 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 ACOT2P49753 483 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 NUCB2P80303 420 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 SPAG1Q07617 926 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 FAM26FQ5R3K3 315 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 ATAT1Q5SQI0 421 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 TMC5Q6UXY8 1006 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 GPR149Q86SP6 731 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 GLYCTKQ8IVS8 523 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 BEST2Q8NFU1 509 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 SUSD3Q96L08 255 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 CLSTN3Q9BQT9 956 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 RHOBTB2Q9BYZ6 727 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 IKZF4Q9H2S9 585 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 POMKQ9H5K3 350 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 HPSEQ9Y251 543 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 UBE4BO95155 1302 aa17.61■□□□□ 0.41
TRIM28-206ENST00000595974 I3L4J1 428 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 ACTN4O43707 911 aaKnown RBP17.6■□□□□ 0.41
TRIM28-206ENST00000595974 PRPF6O94906 941 aaKnown RBP17.6■□□□□ 0.41
TRIM28-206ENST00000595974 LDHAP00338 332 aaKnown RBP17.6■□□□□ 0.41
TRIM28-206ENST00000595974 MCM4P33991 863 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 EHHADHQ08426 723 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 TMEM132DQ14C87 1099 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 SPATA1Q5VX52 437 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 JADE1Q6IE81 842 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 LILRA6Q6PI73 481 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 CYP26C1Q6V0L0 522 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 PALB2Q86YC2 1186 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 KHSRPQ92945 711 aaKnown RBP eCLIP17.6■□□□□ 0.41
TRIM28-206ENST00000595974 FAM212AQ96EL1 285 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 RPGRIP1Q96KN7 1286 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 ZDHHC7Q9NXF8 308 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 CDH22Q9UJ99 828 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 FBXW11Q9UKB1 542 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 C2CD2Q9Y426 696 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 NR2E1Q9Y466 385 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 BACE2Q9Y5Z0 518 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 TSC2P49815 1807 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 MYO10Q9HD67 2058 aa17.6■□□□□ 0.41
TRIM28-206ENST00000595974 DOCK8Q8NF50 2099 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 FAM237AA0A1B0GTK4 181 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 A0A1B0GVL5 298 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 PVALEFA0A1B0GWK0 134 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 KIAA0391O15091 583 aaKnown RBP17.59■□□□□ 0.41
TRIM28-206ENST00000595974 IL18RAPO95256 599 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 PAPLNO95428 1278 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms