RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RFX1P22670 979 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 PIK3CAP42336 1068 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 GRIK3Q13003 919 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 NCOA4Q13772 614 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 PSRC1Q6PGN9 363 aaPredicted RBP11.58□□□□□ -0.56
SS18-213ENST00000579640 TRIM65Q6PJ69 517 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 GSTCDQ8NEC7 633 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 LMO3Q8TAP4 145 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 URGCPQ8TCY9 931 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 TAF4BQ92750 862 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 DPF3Q92784 378 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 BADQ92934 168 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 FAM81BQ96LP2 452 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 PPP1R10Q96QC0 940 aaKnown RBP11.58□□□□□ -0.56
SS18-213ENST00000579640 IMPG2Q9BZV3 1241 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 KANSL3Q9P2N6 904 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 FBXL5Q9UKA1 691 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 VNN1O95497 513 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 AMHP03971 560 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 SLC9A1P19634 815 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 ATICP31939 592 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 RBP5P82980 135 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 SGSM1Q2NKQ1 1148 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 WDR44Q5JSH3 913 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 GLRA4Q5JXX5 417 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 PPFIBP1Q86W92 1011 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 ABI1Q8IZP0 508 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 CRIPAKQ8N1N5 446 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 C1orf127Q8N9H9 656 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 ZFP42Q96MM3 310 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 NR2E3Q9Y5X4 410 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 A0A1W2PQJ5 194 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 STAU1O95793 577 aaKnown RBP11.57□□□□□ -0.56
SS18-213ENST00000579640 FGBP02675 491 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 ITGB3P05106 788 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 IBSPP21815 317 aaPredicted RBP11.57□□□□□ -0.56
SS18-213ENST00000579640 LRPAP1P30533 357 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 KLK7P49862 253 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 SCNN1GP51170 649 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 TBX2Q13207 712 aaPredicted RBP11.57□□□□□ -0.56
SS18-213ENST00000579640 PTPN21Q16825 1174 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 NOMO2Q5JPE7 1267 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 CLLU1OSQ5K130 101 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 KLHDC7AQ5VTJ3 777 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 SMYD5Q6GMV2 418 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 LRRC52Q8N7C0 313 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 HELQQ8TDG4 1101 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 SEMA4DQ92854 862 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 FAXDC2Q96IV6 333 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 NT5C1BQ96P26 610 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 PPP1R9BQ96SB3 815 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 LBHD1Q9BQE6 289 aaPredicted RBP11.57□□□□□ -0.56
SS18-213ENST00000579640 MRPL9Q9BYD2 267 aaKnown RBP11.57□□□□□ -0.56
SS18-213ENST00000579640 CXCL16Q9H2A7 254 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 FAM207AQ9NSI2 230 aaPredicted RBP11.57□□□□□ -0.56
SS18-213ENST00000579640 RNF19AQ9NV58 838 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 CEP72Q9P209 647 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 APEX2Q9UBZ4 518 aa11.57□□□□□ -0.56
SS18-213ENST00000579640 ASS1P00966 412 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 KRT19P08727 400 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 ACRP10323 421 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 RPL9P32969 192 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 PNPLA4P41247 253 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 KCNJ6P48051 423 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 GSDMDP57764 484 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 DPY19L2P1Q6NXN4 242 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.56□□□□□ -0.56
SS18-213ENST00000579640 SPC24Q8NBT2 197 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 CXorf38Q8TB03 319 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 C18orf25Q96B23 403 aaPredicted RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 FAM84AQ96KN4 292 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 ZNF560Q96MR9 790 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 UROC1Q96N76 676 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 TTYH3Q9C0H2 523 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 GANQ9H2C0 597 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 VRTNQ9H8Y1 702 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 SIX2Q9NPC8 291 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 MIOSQ9NXC5 875 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 TUBGCP4Q9UGJ1 667 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 SIX4Q9UIU6 781 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 INPP5FQ9Y2H2 1132 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 TDRD15B5MCY1 1934 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 ANO9A1A5B4 782 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 RBAK-RBAKDNI3L0D1 243 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 NOL4O94818 638 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 CST3P01034 146 aaPredicted RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 GYPCP04921 128 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 FGFR1P11362 822 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 UCHL3P15374 230 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 SYN1P17600 705 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 PAX3P23760 479 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 POLR2BP30876 1174 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 MYL6P60660 151 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 WDR5P61964 334 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 NOP14P78316 857 aaKnown RBP11.56□□□□□ -0.56
SS18-213ENST00000579640 MYO1EQ12965 1108 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 TUSC3Q13454 348 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 NAB2Q15742 525 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 ZNF699Q32M78 642 aa11.56□□□□□ -0.56
SS18-213ENST00000579640 C9orf57Q5W0N0 161 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms