RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 BCL7CQ8WUZ0 217 aaPredicted RBP15.21■□□□□ 0.03
CLN3-235ENST00000568497 NFKBIZQ9BYH8 718 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 ANKFY1Q9P2R3 1169 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 STK17AQ9UEE5 414 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 GMEB2Q9UKD1 530 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 RBM19Q9Y4C8 960 aaKnown RBP15.21■□□□□ 0.03
CLN3-235ENST00000568497 FAM208BQ5VWN6 2430 aa15.21■□□□□ 0.02
CLN3-235ENST00000568497 A0A1B0GUA9 196 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 ANKRD63C9JTQ0 380 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 MEFVO15553 781 aaPredicted RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 GADD45BO75293 160 aaPredicted RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 POU5F1BQ06416 359 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 CUL4BQ13620 913 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 ZNF528Q3MIS6 628 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 GLRA4Q5JXX5 417 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 PPP4R3CPQ6ZMV5 832 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 HAUS6Q7Z4H7 955 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 MRPL10Q7Z7H8 261 aaKnown RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 DDX53Q86TM3 631 aaKnown RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 MAML2Q8IZL2 1156 aaPredicted RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 ZNF710Q8N1W2 664 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 ZSWIM2Q8NEG5 633 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 NXPE3Q969Y0 559 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 FAM84AQ96KN4 292 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 ACO2Q99798 780 aaKnown RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 EMILIN2Q9BXX0 1053 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 BCO2Q9BYV7 579 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 TRIM6Q9C030 488 aaPredicted RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 C2orf40Q9H1Z8 148 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 CDT1Q9H211 546 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 NRDE2Q9H7Z3 1164 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 RSAD1Q9HA92 442 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 PARVGQ9HBI0 331 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 TBC1D13Q9NVG8 400 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 KCNH3Q9ULD8 1083 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 PCDHGA2Q9Y5H1 932 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 MORC2Q9Y6X9 1032 aaPredicted RBP15.2■□□□□ 0.02
CLN3-235ENST00000568497 TRIP11Q15643 1979 aa15.2■□□□□ 0.02
CLN3-235ENST00000568497 ACTN4O43707 911 aaKnown RBP15.19■□□□□ 0.02
CLN3-235ENST00000568497 RECQL4O94761 1208 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 NCKAP1LP55160 1127 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 NUCB2P80303 420 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 SPAG1Q07617 926 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 ACAP1Q15027 740 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 FAM187BQ17R55 369 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 NOMO2Q5JPE7 1267 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 SLC39A4Q6P5W5 647 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 SLC27A1Q6PCB7 646 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 RSPH1Q8WYR4 309 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 ERCC4Q92889 916 aaPredicted RBP15.19■□□□□ 0.02
CLN3-235ENST00000568497 FAM13BQ9NYF5 915 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 EPS15L1Q9UBC2 864 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 FBXO4Q9UKT5 387 aa15.19■□□□□ 0.02
CLN3-235ENST00000568497 CLUHO75153 1309 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 PHLPP2Q6ZVD8 1323 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ARL5CA6NH57 179 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ABLIM1O14639 778 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 SLC26A4O43511 780 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 TRAK2O60296 914 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 PRPF6O94906 941 aaKnown RBP15.18■□□□□ 0.02
CLN3-235ENST00000568497 SLC11A1P49279 550 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 CLCN4P51793 760 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ZNF131P52739 623 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ASIC1P78348 528 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ZNF568Q3ZCX4 644 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ATL3Q6DD88 541 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 GLB1LQ6UWU2 654 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 ST13P5Q8NFI4 369 aaPredicted RBP15.18■□□□□ 0.02
CLN3-235ENST00000568497 CMASQ8NFW8 434 aaPredicted RBP15.18■□□□□ 0.02
CLN3-235ENST00000568497 SPIRE2Q8WWL2 714 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 BICD1Q96G01 975 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 IGSF21Q96ID5 467 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 SHDQ96IW2 340 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 MYADMQ96S97 322 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 PAAF1Q9BRP4 392 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 RHOBTB2Q9BYZ6 727 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 MAN1C1Q9NR34 630 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 PANK4Q9NVE7 773 aa15.18■□□□□ 0.02
CLN3-235ENST00000568497 PRG3Q9Y2Y8 225 aaPredicted RBP15.18■□□□□ 0.02
CLN3-235ENST00000568497 N4BP3O15049 544 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 ZNF623O75123 536 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 AXLP30530 894 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 TNFSF9P41273 254 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 MATR3P43243 847 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLN3-235ENST00000568497 RNASELQ05823 741 aaKnown RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 NCBP1Q09161 790 aaKnown RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 UBXN2BQ14CS0 331 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 CYP26C1Q6V0L0 522 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 GET4Q7L5D6 327 aaPredicted RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 GSTCDQ8NEC7 633 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 PAGE5Q96GU1 130 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 KLHL5Q96PQ7 755 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 TCHPQ9BT92 498 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 MRPL4Q9BYD3 311 aaKnown RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 EPC1Q9H2F5 836 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 TMEM134Q9H6X4 195 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 MRPL44Q9H9J2 332 aaKnown RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 PTPRHQ9HD43 1115 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 WDR6Q9NNW5 1121 aaKnown RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 KBTBD4Q9NVX7 518 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms