RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	ABLIM1	O14639	778 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	ABLIM3	O94929	683 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	PLS3	P13797	630 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	IGFBP6	P24592	240 aa	Predicted RBP	18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	ELF1	P32519	619 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	BRCC3	P46736	316 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	GPC5	P78333	572 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	PFKP	Q01813	784 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	VARS2	Q5ST30	1063 aa	Known RBP	18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	ARL6IP4	Q66PJ3	421 aa	Known RBP	18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	ZMAT2	Q96NC0	199 aa	Known RBP	18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	GDE1	Q9NZC3	331 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	DNMT3B	Q9UBC3	853 aa	Known RBP	18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	NUB1	Q9Y5A7	615 aa		18.43	■□□□□ 0.54
CLN3-231	ENST00000568422	SFI1	A8K8P3	1242 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	SLC26A4	O43511	780 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	ATF2	P15336	505 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	SCP2	P22307	547 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	ROR1	Q01973	937 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	PRKCQ	Q04759	706 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	NOLC1	Q14978	699 aa	Known RBP eCLIP	18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	ZRSR1	Q15695	479 aa	Known RBP	18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	NPAS3	Q8IXF0	933 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	TMEM161B	Q8NDZ6	487 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	PJA1	Q8NG27	643 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	CDK5RAP3	Q96JB5	506 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	RPP25	Q9BUL9	199 aa	Known RBP	18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	PLEKHA5	Q9HAU0	1116 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	HCFC1R1	Q9NWW0	138 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	DLGAP2	Q9P1A6	1054 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	MAFF	Q9ULX9	164 aa		18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	MRPS23	Q9Y3D9	190 aa	Known RBP	18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	RIF1	Q5UIP0	2472 aa	Known RBP	18.42	■□□□□ 0.54
CLN3-231	ENST00000568422	FAM186A	A6NE01	2351 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422		H3BQV1	296 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	PRRG1	O14668	218 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	CLDN3	O15551	220 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	TBC1D4	O60343	1298 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	LRG1	P02750	347 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	RHO	P08100	348 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	MAPT	P10636	758 aa	Known RBP	18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	PTPN2	P17706	415 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	MRPL58	Q14197	206 aa	Known RBP	18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	TPGS2	Q68CL5	300 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	TCEAL8	Q8IYN2	117 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	APPL2	Q8NEU8	664 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	KCNN1	Q92952	543 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	SUSD3	Q96L08	255 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	PNMA5	Q96PV4	448 aa		18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	LARS	Q9P2J5	1176 aa	Known RBP	18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	PTPRZ1	P23471	2315 aa	Predicted RBP	18.41	■□□□□ 0.54
CLN3-231	ENST00000568422	VWA3A	A6NCI4	1184 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	ECI2	O75521	394 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	MICAL2	O94851	1124 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	DCN	P07585	359 aa	Known RBP	18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	PLA2G4B	P0C869	781 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	HARS	P12081	509 aa	Known RBP	18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	SLC12A3	P55017	1021 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	MCL1	Q07820	350 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	SPECC1	Q5M775	1068 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	C18orf25	Q96B23	403 aa	Predicted RBP	18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	TMX3	Q96JJ7	454 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	ZBTB45	Q96K62	511 aa	Predicted RBP	18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	AK8	Q96MA6	479 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	DDX23	Q9BUQ8	820 aa	Known RBP	18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	OSBPL6	Q9BZF3	934 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	ANKFY1	Q9P2R3	1169 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	FANCM	Q8IYD8	2048 aa		18.4	■□□□□ 0.54
CLN3-231	ENST00000568422	KANSL1L	A0AUZ9	987 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	WDR27	A2RRH5	827 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	ZNF197	O14709	1029 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	MCM4	P33991	863 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	MCM2	P49736	904 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	RAD51AP2	Q09MP3	1159 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	MLF2	Q15773	248 aa	Predicted RBP	18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	KYAT1	Q16773	422 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	SLC10A6	Q3KNW5	377 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	SLC44A4	Q53GD3	710 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	ZNF280D	Q6N043	979 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	ZC3H14	Q6PJT7	736 aa	Known RBP	18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	C1orf210	Q8IVY1	113 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	ADSSL1	Q8N142	457 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	ST13P5	Q8NFI4	369 aa	Predicted RBP	18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	TSPAN18	Q96SJ8	248 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	FBXL5	Q9UKA1	691 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	ODF2L	Q9ULJ1	636 aa		18.39	■□□□□ 0.53
CLN3-231	ENST00000568422	CLTA	P09496	248 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	GJB2	P29033	226 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	MARCKS	P29966	332 aa	Predicted RBP	18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	MAGEA9	P43362	315 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	NCKAP1L	P55160	1127 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	SNW1	Q13573	536 aa	Known RBP	18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	CTXN3	Q4LDR2	81 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	TMEM119	Q4V9L6	283 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	ELMOD1	Q8N336	334 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	DDX12P	Q92771	950 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	BORCS6	Q96GS4	357 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	TBC1D32	Q96NH3	1257 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	KXD1	Q9BQD3	176 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	OXCT2	Q9BYC2	517 aa	Predicted RBP	18.38	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms