RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 ZNF461Q8TAF7 563 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 C18orf25Q96B23 403 aaPredicted RBP17.23■□□□□ 0.35
CLK3-211ENST00000563297 PLIN2Q99541 437 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 ARHGEF3Q9NR81 526 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 CNTN3Q9P232 1028 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 KCNG1Q9UIX4 513 aa17.23■□□□□ 0.35
CLK3-211ENST00000563297 VWA3AA6NCI4 1184 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 TOM1L1O75674 476 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 HARSP12081 509 aaKnown RBP17.22■□□□□ 0.35
CLK3-211ENST00000563297 RFX1P22670 979 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 GJB2P29033 226 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 RPL9P32969 192 aaKnown RBP17.22■□□□□ 0.35
CLK3-211ENST00000563297 SMTNP53814 917 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 SLC12A3P55017 1021 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 ROR1Q01973 937 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 STRN3Q13033 797 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 PABPC1LQ4VXU2 614 aaKnown RBP17.22■□□□□ 0.35
CLK3-211ENST00000563297 SEZ6Q53EL9 994 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 NKD2Q969F2 451 aaPredicted RBP17.22■□□□□ 0.35
CLK3-211ENST00000563297 DLGAP2Q9P1A6 1054 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 KCNH3Q9ULD8 1083 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 SIT1Q9Y3P8 196 aa17.22■□□□□ 0.35
CLK3-211ENST00000563297 ARHGEF37A1IGU5 675 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 SYN3O14994 580 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 CD2BP2O95400 341 aaKnown RBP17.21■□□□□ 0.35
CLK3-211ENST00000563297 DCNP07585 359 aaKnown RBP17.21■□□□□ 0.35
CLK3-211ENST00000563297 PLA2G4BP0C869 781 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 MAPTP10636 758 aaKnown RBP17.21■□□□□ 0.35
CLK3-211ENST00000563297 STARD6P59095 220 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 ARSHQ5FYA8 562 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 ARL6IP4Q66PJ3 421 aaKnown RBP17.21■□□□□ 0.35
CLK3-211ENST00000563297 POTEHQ6S545 545 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 MTSS1LQ765P7 747 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 NPAS3Q8IXF0 933 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 NUB1Q9Y5A7 615 aa17.21■□□□□ 0.35
CLK3-211ENST00000563297 SPTBN4Q9H254 2564 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 NPHP3-ACAD11A0A0J9YXS1 232 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 WDR27A2RRH5 827 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 H3BQV1 296 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 RHOP08100 348 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 ATF2P15336 505 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 PTPN2P17706 415 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 ELF1P32519 619 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 ARPP19P56211 112 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 MCL1Q07820 350 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 SNW1Q13573 536 aaKnown RBP17.2■□□□□ 0.34
CLK3-211ENST00000563297 NOLC1Q14978 699 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLK3-211ENST00000563297 TMEM119Q4V9L6 283 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 SPECC1Q5M775 1068 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 ZPBP2Q6X784 338 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 ING5Q8WYH8 240 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 SHDQ96IW2 340 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 SUSD3Q96L08 255 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 HAPLN2Q9GZV7 340 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 AVENQ9NQS1 362 aaPredicted RBP17.2■□□□□ 0.34
CLK3-211ENST00000563297 KCND2Q9NZV8 630 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 ANKFY1Q9P2R3 1169 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 FBXL5Q9UKA1 691 aa17.2■□□□□ 0.34
CLK3-211ENST00000563297 MRPS23Q9Y3D9 190 aaKnown RBP17.2■□□□□ 0.34
CLK3-211ENST00000563297 PDCD11Q14690 1871 aaKnown RBP17.2■□□□□ 0.34
CLK3-211ENST00000563297 H7C4K7 107 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 CLDN3O15551 220 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 SEC24AO95486 1093 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 GLULP15104 373 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 CACNB1Q02641 598 aaPredicted RBP17.19■□□□□ 0.34
CLK3-211ENST00000563297 SLC5A9Q2M3M2 681 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 SLC44A4Q53GD3 710 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 TCEAL8Q8IYN2 117 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 PJA1Q8NG27 643 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 MCRS1Q96EZ8 462 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 CDK5RAP3Q96JB5 506 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 TBC1D32Q96NH3 1257 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 KXD1Q9BQD3 176 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 FOXQ1Q9C009 403 aa17.19■□□□□ 0.34
CLK3-211ENST00000563297 LARSQ9P2J5 1176 aaKnown RBP17.19■□□□□ 0.34
CLK3-211ENST00000563297 EP300Q09472 2414 aaPredicted RBP17.18■□□□□ 0.34
CLK3-211ENST00000563297 PRRG1O14668 218 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 LRRN2O75325 713 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 LRG1P02750 347 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 NCKAP1LP55160 1127 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 ZBTB6Q15916 424 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 CTXN3Q4LDR2 81 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 HAUS6Q7Z4H7 955 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 TMEM130Q8N3G9 435 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 LRRC15Q8TF66 581 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 DDX12PQ92771 950 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 KCNN1Q92952 543 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 DDX23Q9BUQ8 820 aaKnown RBP17.18■□□□□ 0.34
CLK3-211ENST00000563297 PLA2G2FQ9BZM2 168 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 PLEKHA5Q9HAU0 1116 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 CYP4F11Q9HBI6 524 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 GDE1Q9NZC3 331 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 TUBGCP4Q9UGJ1 667 aa17.18■□□□□ 0.34
CLK3-211ENST00000563297 KANSL1LA0AUZ9 987 aa17.17■□□□□ 0.34
CLK3-211ENST00000563297 TTC26A0AVF1 554 aa17.17■□□□□ 0.34
CLK3-211ENST00000563297 CLTAP09496 248 aa17.17■□□□□ 0.34
CLK3-211ENST00000563297 CXCL8P10145 99 aa17.17■□□□□ 0.34
CLK3-211ENST00000563297 MCM4P33991 863 aa17.17■□□□□ 0.34
CLK3-211ENST00000563297 SPAG1Q07617 926 aa17.17■□□□□ 0.34
CLK3-211ENST00000563297 MLF2Q15773 248 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms