RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 MST1RQ04912 1400 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 UBAP1LF5GYI3 381 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 IPO5O00410 1097 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 PYGMP11217 842 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 KRT4P19013 534 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 FECHP22830 423 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 RPA1P27694 616 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 CRKP46108 304 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 YWHAEP62258 255 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 ECM1Q16610 540 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 INTS5Q6P9B9 1019 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 RSBN1LQ6PCB5 846 aaPredicted RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 ARHGAP27Q6ZUM4 889 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 NLRP9Q7RTR0 991 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 PCGF5Q86SE9 256 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 SLC47A2Q86VL8 602 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 RASSF3Q86WH2 238 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 FBXL13Q8NEE6 735 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 PPWD1Q96BP3 646 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 LRGUKQ96M69 825 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 INPP4AQ96PE3 977 aaPredicted RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 TRIM56Q9BRZ2 755 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 THTPAQ9BU02 230 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 MSTO1Q9BUK6 570 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 FGFBP2Q9BYJ0 223 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 MANSC1Q9H8J5 431 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 UVRAGQ9P2Y5 699 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 TRAF3IP3Q9Y228 551 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 GINS2Q9Y248 185 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 ESYT2A0FGR8 921 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 AP1G2O75843 785 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 CBX6O95503 412 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 SF3B3Q15393 1217 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 CNGA2Q16280 664 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 RAPH1Q70E73 1250 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 AGR3Q8TD06 166 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 PPP1R36Q96LQ0 422 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 GANQ9H2C0 597 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 TUFT1Q9NNX1 390 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 METTL5Q9NRN9 209 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 IP6K2Q9UHH9 426 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 CACNA1FO60840 1977 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 FOXO6A8MYZ6 492 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 CAPN9O14815 690 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 GIPC1O14908 333 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 EIF3DO15371 548 aaKnown RBP eCLIP7.51□□□□□ -1.21
USP3-210ENST00000559192 MSH4O15457 936 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 FNTAP49354 379 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 KCNA1Q09470 495 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 ASPHQ12797 758 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 MTMR1Q13613 665 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 NFIXQ14938 502 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 DLGAP5Q15398 846 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 MMEL1Q495T6 779 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 SLC44A4Q53GD3 710 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 TMEM179Q6ZVK1 233 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 LNX1Q8TBB1 728 aaPredicted RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 CDKL2Q92772 493 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 ACAP3Q96P50 834 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 APOL6Q9BWW8 343 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 SPC25Q9HBM1 224 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 NAALADL1Q9UQQ1 740 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 APOBEC2Q9Y235 224 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 HEY1Q9Y5J3 304 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 KRT37O76014 449 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 HGSNATQ68CP4 663 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 C1orf228Q6PIY5 440 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 BZW1Q7L1Q6 419 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 TRIM50Q86XT4 487 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 ARHGEF19Q8IW93 802 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 KRT35Q92764 455 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 HEY2Q9UBP5 337 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 CHMP2BQ9UQN3 213 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 B2RBV5 119 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 ATP9AO75110 1047 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 KRT16P08779 473 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 KRT3P12035 628 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 HNRNPH3P31942 346 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 SLC1A1P43005 524 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 CCDC15Q0P6D6 951 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 SNRNP35Q16560 246 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 MFSD4BQ5TF39 518 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 OLFML2BQ68BL8 750 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 LINC00116Q8NCU8 138 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 MCEEQ96PE7 176 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 MTMR9Q96QG7 549 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 MMTAG2Q9BU76 263 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 NARFQ9UHQ1 456 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 WDR64B1ANS9 1081 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 NOP56O00567 594 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 TLR2O60603 784 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 TTC4O95801 387 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 ZBED1O96006 694 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 GARSP41250 739 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 ECE1P42892 770 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 MARCKSL1P49006 195 aa7.5□□□□□ -1.21
USP3-210ENST00000559192 PAPOLAP51003 745 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 YARSP54577 528 aaKnown RBP7.5□□□□□ -1.21
USP3-210ENST00000559192 TTLL12Q14166 644 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms