RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 EIF3DO15371 548 aaKnown RBP eCLIP12.92□□□□□ -0.34
YBX3-217ENST00000546164 TRAPPC3O43617 180 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 MYL1P05976 194 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 EPCAMP16422 314 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 GARTP22102 1010 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 FGFR3P22607 806 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 KLRC2P26717 231 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 LRPAP1P30533 357 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 TPRNQ4KMQ1 711 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 RTP2Q5QGT7 225 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 FAM26FQ5R3K3 315 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 FAM171A1Q5VUB5 890 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 LLGL2Q6P1M3 1020 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 EPM2AIP1Q7L775 607 aaPredicted RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 CEP57L1Q8IYX8 460 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 C3orf58Q8NDZ4 430 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 HASPINQ8TF76 798 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 RIN2Q8WYP3 895 aaPredicted RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 C18orf25Q96B23 403 aaPredicted RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 IKZF4Q9H2S9 585 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 ASB7Q9H672 318 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 SERTAD1Q9UHV2 236 aa12.92□□□□□ -0.34
YBX3-217ENST00000546164 AGO2Q9UKV8 859 aaKnown RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 UBQLN1Q9UMX0 589 aaKnown RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 USP15Q9Y4E8 981 aaPredicted RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 TCF20Q9UGU0 1960 aaKnown RBP12.92□□□□□ -0.34
YBX3-217ENST00000546164 TRIP11Q15643 1979 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 SPDYE4A6NLX3 237 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 LACTBL1A8MY62 500 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 XPOTO43592 962 aaKnown RBP12.91□□□□□ -0.34
YBX3-217ENST00000546164 PRPF6O94906 941 aaKnown RBP12.91□□□□□ -0.34
YBX3-217ENST00000546164 PAPLNO95428 1278 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 IGFBP6P24592 240 aaPredicted RBP12.91□□□□□ -0.34
YBX3-217ENST00000546164 ZP2Q05996 745 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 ITIH3Q06033 890 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 CUL4BQ13620 913 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 CRELD2Q6UXH1 353 aaPredicted RBP12.91□□□□□ -0.34
YBX3-217ENST00000546164 ADHFE1Q8IWW8 467 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 SYCP3Q8IZU3 236 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 LNX1Q8TBB1 728 aaPredicted RBP12.91□□□□□ -0.34
YBX3-217ENST00000546164 HDAC7Q8WUI4 952 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 POMGNT1Q8WZA1 660 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 PAGE5Q96GU1 130 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 B3GALT6Q96L58 329 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 FBXL18Q96ME1 805 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 POP1Q99575 1024 aaKnown RBP12.91□□□□□ -0.34
YBX3-217ENST00000546164 BLZF1Q9H2G9 400 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 ADAM7Q9H2U9 754 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 TUBGCP4Q9UGJ1 667 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 DPP7Q9UHL4 492 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 DERAQ9Y315 318 aa12.91□□□□□ -0.34
YBX3-217ENST00000546164 UBE4BO95155 1302 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 SYN3O14994 580 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 KIAA0391O15091 583 aaKnown RBP12.9□□□□□ -0.34
YBX3-217ENST00000546164 LDHAP00338 332 aaKnown RBP12.9□□□□□ -0.34
YBX3-217ENST00000546164 GLUD1P00367 558 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 CASP1P29466 404 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 HOXD13P35453 343 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 SYKP43405 635 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 AFMP43652 599 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 ACOT2P49753 483 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 NDUFA8P51970 172 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 PSMD5Q16401 504 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 BMT2Q1RMZ1 405 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 SPATA1Q5VX52 437 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 LILRA6Q6PI73 481 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 GJD3Q8N144 294 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 GLIS3Q8NEA6 775 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 CMASQ8NFW8 434 aaPredicted RBP12.9□□□□□ -0.34
YBX3-217ENST00000546164 ZNF507Q8TCN5 953 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 HPS3Q969F9 1004 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 KIF12Q96FN5 646 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 RHOBTB2Q9BYZ6 727 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 SFXN1Q9H9B4 322 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 CIZ1Q9ULV3 898 aaPredicted RBP12.9□□□□□ -0.34
YBX3-217ENST00000546164 C2CD2Q9Y426 696 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 BACE2Q9Y5Z0 518 aa12.9□□□□□ -0.34
YBX3-217ENST00000546164 KLRC4O43908 158 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 EXTL3O43909 919 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 IL18RAPO95256 599 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 PAX3P23760 479 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 BRCC3P46736 316 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 AARSP49588 968 aaKnown RBP eCLIP12.89□□□□□ -0.35
YBX3-217ENST00000546164 SNRPFP62306 86 aaKnown RBP12.89□□□□□ -0.35
YBX3-217ENST00000546164 SPAG1Q07617 926 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 CBX2Q14781 532 aaPredicted RBP12.89□□□□□ -0.35
YBX3-217ENST00000546164 JADE1Q6IE81 842 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 CES5AQ6NT32 575 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 ELMSAN1Q6PJG2 1045 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 PRSS55Q6UWB4 352 aaPredicted RBP12.89□□□□□ -0.35
YBX3-217ENST00000546164 ANKS3Q6ZW76 656 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 CEP57Q86XR8 500 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 NT5DC4Q86YG4 428 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 BRSK2Q8IWQ3 736 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 FSIP1Q8NA03 581 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 BEST2Q8NFU1 509 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 SCFD1Q8WVM8 642 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 SUSD3Q96L08 255 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 NECTIN4Q96NY8 510 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms