RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CBWD6Q4V339 395 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 CBWD3Q5JTY5 395 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 CBWD5Q5RIA9 395 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 ENOSF1Q7L5Y1 443 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 TTC39CQ8N584 583 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 EHBP1Q8NDI1 1231 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 GSTCDQ8NEC7 633 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 HERVK_113Q902F9 699 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 TOP1MTQ969P6 601 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 ZNF560Q96MR9 790 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 SLC9A7Q96T83 725 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 GAD1Q99259 594 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 APOL6Q9BWW8 343 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 MTMR12Q9C0I1 747 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 RAB20Q9NX57 234 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 SIK3Q9Y2K2 1263 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 PTPRSQ13332 1948 aa17.27■□□□□ 0.36
PRPF40A-212ENST00000545856 PDE4DIPQ5VU43 2346 aa17.27■□□□□ 0.36
PRPF40A-212ENST00000545856 PTGESO14684 152 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 PHACTR2O75167 634 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 P4HA1P13674 534 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 WDR5P61964 334 aaKnown RBP17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 MYO1EQ12965 1108 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 TUSC3Q13454 348 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 NCOA4Q13772 614 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 SYCP1Q15431 976 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 NOMO2Q5JPE7 1267 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 WDR44Q5JSH3 913 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 TDRD10Q5VZ19 366 aaKnown RBP17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 LRRC43Q8N309 656 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 NUCKS1Q9H1E3 243 aaKnown RBP17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 DPP3Q9NY33 737 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 MYO6Q9UM54 1294 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 PTPRJQ12913 1337 aa17.27■□□□□ 0.35
PRPF40A-212ENST00000545856 A0A1W2PQJ5 194 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 ARHGEF37A1IGU5 675 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 TEX33O43247 280 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 ASS1P00966 412 aaKnown RBP17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 TBXAS1P24557 533 aaPredicted RBP17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 PIK3CAP42336 1068 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 WNT7BP56706 349 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 GCNT1Q02742 428 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 TMEM240Q5SV17 173 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 TRIM65Q6PJ69 517 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 C1orf127Q8N9H9 656 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 NEK11Q8NG66 645 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 OR5B17Q8NGF7 314 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 ZNF516Q92618 1163 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 ZMAT2Q96NC0 199 aaKnown RBP17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 POP1Q99575 1024 aaKnown RBP17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 APEX2Q9UBZ4 518 aa17.26■□□□□ 0.35
PRPF40A-212ENST00000545856 ANO9A1A5B4 782 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 TMEM189-UBE2V1I3L0A0 370 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 AP5Z1O43299 807 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 DGKIO75912 1065 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 HLA-DRAP01903 254 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 FAM163BP0C2L3 166 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 TRIM21P19474 475 aaKnown RBP17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 PON1P27169 355 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 RGS19P49795 217 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 DSC1Q08554 894 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 NAB2Q15742 525 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 CLLU1OSQ5K130 101 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 CMTR2Q8IYT2 770 aaKnown RBP17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 RNF169Q8NCN4 708 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 LMO3Q8TAP4 145 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 SPATA18Q8TC71 538 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 TAS1R2Q8TE23 839 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 LPPQ93052 612 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 PDLIM2Q96JY6 352 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 ZFP42Q96MM3 310 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 NT5C1BQ96P26 610 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 TMEM175Q9BSA9 504 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 INTS2Q9H0H0 1204 aaKnown RBP17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 STK39Q9UEW8 545 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 SCN1AP35498 2009 aa17.25■□□□□ 0.35
PRPF40A-212ENST00000545856 PIRO00625 290 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 SCNN1GP51170 649 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 YWHAEP62258 255 aaKnown RBP17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 CCDC173Q0VFZ6 552 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 TCTN1Q2MV58 587 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 RASIP1Q5U651 963 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 ZNF365Q70YC5 407 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 C16orf59Q7L2K0 433 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 ZNF397Q8NF99 534 aaPredicted RBP17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 CXorf38Q8TB03 319 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 HELQQ8TDG4 1101 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 PCMTD1Q96MG8 357 aaPredicted RBP17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 RC3H2Q9HBD1 1191 aaKnown RBP17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 RNF19AQ9NV58 838 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 KLK14Q9P0G3 267 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 CEP72Q9P209 647 aa17.24■□□□□ 0.35
PRPF40A-212ENST00000545856 MEIS3P2A8K0S8 358 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 VNN1O95497 513 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 ITGB3P05106 788 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 GSDMDP57764 484 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 KCNMA1Q12791 1236 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 ZNF699Q32M78 642 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 SV2CQ496J9 727 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 C9orf57Q5W0N0 161 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms