RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 BCO2Q9BYV7 579 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 RHOBTB2Q9BYZ6 727 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 OBP2AQ9NY56 170 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 ZNF69Q9UC07 566 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 ZNF180Q9UJW8 692 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 ATP11BQ9Y2G3 1177 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 IPPQ9Y573 584 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 ATP6V1DQ9Y5K8 247 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 CLIC4Q9Y696 253 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 MROH7Q68CQ1 1323 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 EMSYQ7Z589 1322 aa5.66□□□□□ -1.5
CLIP1-217ENST00000543205 IGKV6D-21A0A0A0MT36 114 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 DCDC2CA8MYV0 355 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 HAS3O00219 553 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 TLR3O15455 904 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 PQBP1O60828 265 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 DKC1O60832 514 aaKnown RBP eCLIP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ARHGEF15O94989 841 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 HALP42357 657 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 SLC26A2P50443 739 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 RTP1P59025 263 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 PSMC5P62195 406 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 RBM10P98175 930 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ATP11AP98196 1134 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 PTPN11Q06124 597 aaPredicted RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ITKQ08881 620 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 EPHA7Q15375 998 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 LRRC26Q2I0M4 334 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 TRIM60Q495X7 471 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ALFQ53S48 1182 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ARL6IP4Q66PJ3 421 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 B3GNT9Q6UX72 402 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 CHSY3Q70JA7 882 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 TRMT1LQ7Z2T5 733 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 CCDC60Q8IWA6 550 aaPredicted RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 AFAP1L1Q8TED9 768 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 NUDT8Q8WV74 236 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 PLD4Q96BZ4 506 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ERP27Q96DN0 273 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 IPO9Q96P70 1041 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 SMG9Q9H0W8 520 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 NRBP2Q9NSY0 501 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 CLIC5Q9NZA1 410 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 HDAC6Q9UBN7 1215 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 LRWD1Q9UFC0 647 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 CFAP45Q9UL16 551 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 FRMD4BQ9Y2L6 1034 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 ZDHHC9Q9Y397 364 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 FRMPD3Q5JV73 1810 aa5.65□□□□□ -1.5
CLIP1-217ENST00000543205 MKI67P46013 3256 aaKnown RBP5.65□□□□□ -1.5
CLIP1-217ENST00000543205 SZT2Q5T011 3432 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 C17orf102A2RUQ5 167 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 VWA3AA6NCI4 1184 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 PRRT4C9JH25 899 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 GIPC1O14908 333 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 GREM1O60565 184 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 HIP1RO75146 1068 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 FAM153BP0C7A2 387 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SMIM10L2AP0DMW4 78 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SMIM10L2BP0DMW5 78 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 VDRP11473 427 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 GNAT1P11488 350 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 CALRP27797 417 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 QARSP47897 775 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SARSP49591 514 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 CDK7P50613 346 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SPIRE1Q08AE8 756 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 PPFIA1Q13136 1202 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 COL9A2Q14055 689 aaPredicted RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 PDIA5Q14554 519 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SNX17Q15036 470 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 PLCB4Q15147 1175 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 STK38Q15208 465 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 GFOD2Q3B7J2 385 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 HAUS3Q68CZ6 603 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 ATL3Q6DD88 541 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SESTD1Q86VW0 696 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 TPH2Q8IWU9 490 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 SYNPOQ8N3V7 929 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 CEP120Q8N960 986 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 NEK9Q8TD19 979 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 PPP1R13LQ8WUF5 828 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 JPH3Q8WXH2 748 aaPredicted RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 TRMT2BQ96GJ1 504 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 DYDC2Q96IM9 177 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 FAM167AQ96KS9 214 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 TOX2Q96NM4 488 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 USP28Q96RU2 1077 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 OSMRQ99650 979 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 EIF2AK1Q9BQI3 630 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 LPIN3Q9BQK8 851 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 TARS2Q9BW92 718 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 FTOQ9C0B1 505 aaKnown RBP eCLIP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 RASSF4Q9H2L5 321 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 RNPEPQ9H4A4 650 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 USP25Q9UHP3 1055 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 PUF60Q9UHX1 559 aaKnown RBP5.65□□□□□ -1.51
CLIP1-217ENST00000543205 GRIN2DO15399 1336 aa5.65□□□□□ -1.51
CLIP1-217ENST00000543205 RRN3P2A6NIE6 340 aa5.64□□□□□ -1.51
CLIP1-217ENST00000543205 HBP1O60381 514 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms