RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 REXO1L1PQ8IX06 675 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 KIF12Q96FN5 646 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 APOL6Q9BWW8 343 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 CRISPLD2Q9H0B8 497 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 PARP2Q9UGN5 583 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 PADI3Q9ULW8 664 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 IPPQ9Y573 584 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 GOLGA6L9A6NEM1 432 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 EVI5O60447 810 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 OFD1O75665 1012 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 RECQL4O94761 1208 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 CD52P31358 61 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 CTCFP49711 727 aaPredicted RBP22.62■■□□□ 1.21
VPS28-208ENST00000527797 MYL6P60660 151 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 NOP14P78316 857 aaKnown RBP22.62■■□□□ 1.21
VPS28-208ENST00000527797 SPOPLQ6IQ16 392 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 FAM126BQ8IXS8 530 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 SMG8Q8ND04 991 aaKnown RBP22.62■■□□□ 1.21
VPS28-208ENST00000527797 CAGE1Q8TC20 777 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 U2AF1L4Q8WU68 220 aaKnown RBP22.62■■□□□ 1.21
VPS28-208ENST00000527797 SHC3Q92529 594 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 ELMO3Q96BJ8 720 aa22.62■■□□□ 1.21
VPS28-208ENST00000527797 APOBEC3GQ9HC16 384 aaKnown RBP22.62■■□□□ 1.21
VPS28-208ENST00000527797 ASS1P00966 412 aaKnown RBP22.61■■□□□ 1.21
VPS28-208ENST00000527797 KRT19P08727 400 aa22.61■■□□□ 1.21
VPS28-208ENST00000527797 TBXAS1P24557 533 aaPredicted RBP22.61■■□□□ 1.21
VPS28-208ENST00000527797 AKAP5P24588 427 aa22.61■■□□□ 1.21
VPS28-208ENST00000527797 ASTE1Q2TB18 679 aaPredicted RBP22.61■■□□□ 1.21
VPS28-208ENST00000527797 C1orf127Q8N9H9 656 aa22.61■■□□□ 1.21
VPS28-208ENST00000527797 ARMC5Q96C12 935 aa22.61■■□□□ 1.21
VPS28-208ENST00000527797 R3HCC1Q9Y3T6 440 aaKnown RBP22.61■■□□□ 1.21
VPS28-208ENST00000527797 PCDHB2Q9Y5E7 798 aa22.61■■□□□ 1.21
VPS28-208ENST00000527797 ANXA13P27216 316 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 USP8P40818 1118 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 PTK2Q05397 1052 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 BFSP2Q13515 415 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 ALKAL1Q6UXT8 129 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 HACE1Q8IYU2 909 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 TAF4BQ92750 862 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 JAKMIP2Q96AA8 810 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 TSPAN18Q96SJ8 248 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.6■■□□□ 1.21
VPS28-208ENST00000527797 OSBPL7Q9BZF2 842 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 RNF39Q9H2S5 420 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 FAM105AQ9NUU6 356 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 CNTN3Q9P232 1028 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 NUB1Q9Y5A7 615 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 LCA5LO95447 670 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 CUL2Q13617 745 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 ZNF699Q32M78 642 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 SCARA3Q6AZY7 606 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 TRAF7Q6Q0C0 670 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 ZNF571Q7Z3V5 609 aaPredicted RBP22.6■■□□□ 1.21
VPS28-208ENST00000527797 VPS36Q86VN1 386 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 FAM71AQ8IYT1 594 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 DPP3Q9NY33 737 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 SIX4Q9UIU6 781 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 ITGA11Q9UKX5 1188 aa22.6■■□□□ 1.21
VPS28-208ENST00000527797 REXO2Q9Y3B8 237 aaKnown RBP22.6■■□□□ 1.21
VPS28-208ENST00000527797 TLR3O15455 904 aaKnown RBP22.59■■□□□ 1.21
VPS28-208ENST00000527797 CD4P01730 458 aa22.59■■□□□ 1.21
VPS28-208ENST00000527797 ITGB3P05106 788 aa22.59■■□□□ 1.21
VPS28-208ENST00000527797 HSPA1AP0DMV8 641 aaKnown RBP22.59■■□□□ 1.21
VPS28-208ENST00000527797 HSPA1BP0DMV9 641 aaKnown RBP22.59■■□□□ 1.21
VPS28-208ENST00000527797 CLCN1P35523 988 aa22.59■■□□□ 1.21
VPS28-208ENST00000527797 SELPP16109 830 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 ATICP31939 592 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 RAB27AP51159 221 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 RBP5P82980 135 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 CYP27A1Q02318 531 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 GFPT1Q06210 699 aaPredicted RBP22.58■■□□□ 1.21
VPS28-208ENST00000527797 PTPN14Q15678 1187 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 XKR4Q5GH76 650 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 BEST2Q8NFU1 509 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 XYLT2Q9H1B5 865 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 KLK14Q9P0G3 267 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 ADAMTS1Q9UHI8 967 aa22.58■■□□□ 1.21
VPS28-208ENST00000527797 HTTP42858 3142 aa22.58■■□□□ 1.2
VPS28-208ENST00000527797 RBAK-RBAKDNI3L0D1 243 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 ITGA4P13612 1032 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 MNX1P50219 401 aaPredicted RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 DSC3Q14574 896 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 ZBTB6Q15916 424 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 SLC18A3Q16572 532 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 SLC39A5Q6ZMH5 540 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 LRRC8DQ7L1W4 858 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 KIAA1328Q86T90 577 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 CXorf38Q8TB03 319 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 C16orf45Q96MC5 204 aaPredicted RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 ZMAT2Q96NC0 199 aaKnown RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 ARID3AQ99856 593 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 TRAIPQ9BWF2 469 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 NIF3L1Q9GZT8 377 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 CXCL16Q9H2A7 254 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 UBQLN1Q9UMX0 589 aaKnown RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 AGAP1Q9UPQ3 857 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 UMODL1Q5DID0 1318 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 SMIM28A0A1B0GU29 152 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 ZNF263O14978 683 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 CYP26A1O43174 497 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms