RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CACTINQ8WUQ7 758 aaKnown RBP20.92■□□□□ 0.94
USP39-218ENST00000493829 SEMA4DQ92854 862 aa20.92■□□□□ 0.94
USP39-218ENST00000493829 PPP1R10Q96QC0 940 aaKnown RBP20.92■□□□□ 0.94
USP39-218ENST00000493829 PI4K2AQ9BTU6 479 aa20.92■□□□□ 0.94
USP39-218ENST00000493829 INTS2Q9H0H0 1204 aaKnown RBP20.92■□□□□ 0.94
USP39-218ENST00000493829 DPP3Q9NY33 737 aa20.92■□□□□ 0.94
USP39-218ENST00000493829 CXXC1Q9P0U4 656 aaPredicted RBP20.92■□□□□ 0.94
USP39-218ENST00000493829 DERAQ9Y315 318 aa20.92■□□□□ 0.94
USP39-218ENST00000493829 TTC3P53804 2025 aa20.92■□□□□ 0.94
USP39-218ENST00000493829 HLA-DRAP01903 254 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 THP07101 528 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 SLC9A1P19634 815 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 POLR2BP30876 1174 aaKnown RBP20.91■□□□□ 0.94
USP39-218ENST00000493829 MCCD1P59942 119 aaPredicted RBP20.91■□□□□ 0.94
USP39-218ENST00000493829 LRMPQ12912 555 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 EXOC3L4Q17RC7 722 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 EPC2Q52LR7 807 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 TMC6Q7Z403 805 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 FBXL13Q8NEE6 735 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 BEST2Q8NFU1 509 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 RABGGTAQ92696 567 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 MRFAP1L1Q96HT8 127 aa20.91■□□□□ 0.94
USP39-218ENST00000493829 FAM207AQ9NSI2 230 aaPredicted RBP20.91■□□□□ 0.94
USP39-218ENST00000493829 UBQLN1Q9UMX0 589 aaKnown RBP20.91■□□□□ 0.94
USP39-218ENST00000493829 TBKBP1A7MCY6 615 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 EFCAB14O75071 495 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 MAGEA10P43363 369 aaPredicted RBP20.9■□□□□ 0.94
USP39-218ENST00000493829 AP3M2P53677 418 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 KCNMA1Q12791 1236 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 CETN1Q12798 172 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 NCOA4Q13772 614 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 NOMO2Q5JPE7 1267 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 DRC7Q8IY82 874 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 CRIPAKQ8N1N5 446 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 HCSTQ9UBK5 93 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 SIX4Q9UIU6 781 aa20.9■□□□□ 0.94
USP39-218ENST00000493829 CASTOR2A6NHX0 329 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 PPEF2O14830 753 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 RNASELQ05823 741 aaKnown RBP20.89■□□□□ 0.94
USP39-218ENST00000493829 GRIK3Q13003 919 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 TRPC3Q13507 836 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 ZBTB6Q15916 424 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 FAM43BQ6ZT52 329 aaPredicted RBP20.89■□□□□ 0.94
USP39-218ENST00000493829 NT5DC4Q86YG4 428 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 SPC24Q8NBT2 197 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 ANP32BQ92688 251 aaKnown RBP20.89■□□□□ 0.94
USP39-218ENST00000493829 RAB20Q9NX57 234 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 SIK3Q9Y2K2 1263 aa20.89■□□□□ 0.94
USP39-218ENST00000493829 XPOTO43592 962 aaKnown RBP20.89■□□□□ 0.93
USP39-218ENST00000493829 CST3P01034 146 aaPredicted RBP20.89■□□□□ 0.93
USP39-218ENST00000493829 PON1P27169 355 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 PBX1P40424 430 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 MYL6P60660 151 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 SPOPLQ6IQ16 392 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 TRIM65Q6PJ69 517 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 VSTM4Q8IW00 320 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 CASD1Q96PB1 797 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 ERGIC2Q96RQ1 377 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 SLC38A7Q9NVC3 462 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 TBC1D13Q9NVG8 400 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 ITGA11Q9UKX5 1188 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 AGAP1Q9UPQ3 857 aa20.89■□□□□ 0.93
USP39-218ENST00000493829 COL4A6Q14031 1691 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 GTPBP10A4D1E9 387 aaKnown RBP20.88■□□□□ 0.93
USP39-218ENST00000493829 EPHB6O15197 1021 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 P4HA2O15460 535 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 HOXA2O43364 376 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 B4GALT3O60512 393 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 NAB2Q15742 525 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 GJB7Q6PEY0 223 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 TOP1MTQ969P6 601 aa20.88■□□□□ 0.93
USP39-218ENST00000493829 R3HCC1Q9Y3T6 440 aaKnown RBP20.88■□□□□ 0.93
USP39-218ENST00000493829 FNDC1Q4ZHG4 1894 aaPredicted RBP20.88■□□□□ 0.93
USP39-218ENST00000493829 A0A1W2PQC6 194 aa20.87■□□□□ 0.93
USP39-218ENST00000493829 ZNF280BQ86YH2 543 aa20.87■□□□□ 0.93
USP39-218ENST00000493829 EHBP1Q8NDI1 1231 aa20.87■□□□□ 0.93
USP39-218ENST00000493829 PAAF1Q9BRP4 392 aa20.87■□□□□ 0.93
USP39-218ENST00000493829 RNF216Q9NWF9 866 aaPredicted RBP20.87■□□□□ 0.93
USP39-218ENST00000493829 INPPL1O15357 1258 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 DGKIO75912 1065 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 DDHD2O94830 711 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 CLCNKBP51801 687 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 ZNF699Q32M78 642 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 C9orf50Q5SZB4 431 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 C9orf57Q5W0N0 161 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 SPECC1LQ69YQ0 1117 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 ARHGEF19Q8IW93 802 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 NEK11Q8NG66 645 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 LMO3Q8TAP4 145 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 CXorf38Q8TB03 319 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 HERVK_113Q902F9 699 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 IMPG2Q9BZV3 1241 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 SIX2Q9NPC8 291 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 COQ4Q9Y3A0 265 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 TRIM21P19474 475 aaKnown RBP20.86■□□□□ 0.93
USP39-218ENST00000493829 NOP14P78316 857 aaKnown RBP20.86■□□□□ 0.93
USP39-218ENST00000493829 RBP5P82980 135 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 TUSC3Q13454 348 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 SCARA5Q6ZMJ2 495 aa20.86■□□□□ 0.93
USP39-218ENST00000493829 GPIHBP1Q8IV16 184 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms