RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 EEF1DP3Q658K8 133 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 TPGS2Q68CL5 300 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 MPZL3Q6UWV2 235 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 IGSF22Q8N9C0 903 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 LEMD2Q8NC56 503 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 ZNF461Q8TAF7 563 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 ACO2Q99798 780 aaKnown RBP12.67□□□□□ -0.38
COL6A3-213ENST00000493475 OXCT2Q9BYC2 517 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-213ENST00000493475 OSBPL6Q9BZF3 934 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 UPF2Q9HAU5 1272 aaKnown RBP12.67□□□□□ -0.38
COL6A3-213ENST00000493475 ARHGEF37A1IGU5 675 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 H3BQV1 296 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 KINO60870 393 aaKnown RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 HIP1RO75146 1068 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 ECI2O75521 394 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 TOM1L1O75674 476 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 DCNP07585 359 aaKnown RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 U2AF2P26368 475 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 ID4P47928 161 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 OSTNP61366 133 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 GPC5P78333 572 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 PLD1Q13393 1074 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 UBXN2BQ14CS0 331 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 ZRSR1Q15695 479 aaKnown RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 NAB2Q15742 525 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 ZBTB41Q5SVQ8 909 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 NT5DC1Q5TFE4 455 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 MCTP1Q6DN14 999 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 SLC8B1Q6J4K2 584 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 ZNF280DQ6N043 979 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 PARM1Q6UWI2 310 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 PDZD4Q76G19 769 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 FGF14Q92915 247 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 BICD1Q96G01 975 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 CDT1Q9H211 546 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 AVENQ9NQS1 362 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 SPATA6Q9NWH7 488 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 LARSQ9P2J5 1176 aaKnown RBP12.66□□□□□ -0.38
COL6A3-213ENST00000493475 ANKFY1Q9P2R3 1169 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 CACNG4Q9UBN1 327 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 C2orf16Q68DN1 1984 aa12.66□□□□□ -0.38
COL6A3-213ENST00000493475 PLXNA3P51805 1871 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 FAM186AA6NE01 2351 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 CLDN3O15551 220 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 MICAL2O94851 1124 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 RHOP08100 348 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 HARSP12081 509 aaKnown RBP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ATF2P15336 505 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 KCNE1P15382 129 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 PAX3P23760 479 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 GUCY2CP25092 1073 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 TKTP29401 623 aaKnown RBP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 MCM4P33991 863 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ARPP19P56211 112 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 SNW1Q13573 536 aaKnown RBP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 NOLC1Q14978 699 aaKnown RBP eCLIP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 CTXN3Q4LDR2 81 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 SLC44A4Q53GD3 710 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 VARS2Q5ST30 1063 aaKnown RBP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ZPBP2Q6X784 338 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ZNF852Q6ZMS4 543 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 USP37Q86T82 979 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 NPAS3Q8IXF0 933 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 GPR161Q8N6U8 529 aaKnown RBP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 RASSF8Q8NHQ8 419 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 FEZF2Q8TBJ5 459 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 SPIRE2Q8WWL2 714 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ATRIPQ8WXE1 791 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 DNASE1L2Q92874 299 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ZNF512Q96ME7 567 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-213ENST00000493475 TSPAN18Q96SJ8 248 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 PLEKHA5Q9HAU0 1116 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 CYP4F11Q9HBI6 524 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 CNTN3Q9P232 1028 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 ARHGAP28Q9P2N2 729 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 FBXO4Q9UKT5 387 aa12.65□□□□□ -0.38
COL6A3-213ENST00000493475 CFAP54Q96N23 3096 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 E9PMD0 336 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 MAN2B1O00754 1011 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 SPTLC1O15269 473 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 SLC26A4O43511 780 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 PLS3P13797 630 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 CPB1P15086 417 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 SDHBP21912 280 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 NTHL1P78549 312 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 ROR1Q01973 937 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 ZNF528Q3MIS6 628 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 XKR4Q5GH76 650 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 RINT1Q6NUQ1 792 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 C1orf228Q6PIY5 440 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 TCEAL8Q8IYN2 117 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 ITFG1Q8TB96 612 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 RUBCNQ92622 972 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 E2F7Q96AV8 911 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 ELSPBP1Q96BH3 223 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 CALML4Q96GE6 196 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 KXD1Q9BQD3 176 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 IER2Q9BTL4 223 aa12.64□□□□□ -0.39
COL6A3-213ENST00000493475 TARS2Q9BW92 718 aaKnown RBP12.64□□□□□ -0.39
COL6A3-213ENST00000493475 GPR88Q9GZN0 384 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms