RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MTHFD1LQ6UB35 978 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 KCTD17Q8N5Z5 321 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ADAM33Q9BZ11 813 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 RPAP3Q9H6T3 665 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-210ENST00000487017 SFMBT1Q9UHJ3 866 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 PLAGL2Q9UPG8 496 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 P4HA2O15460 535 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CD44P16070 742 aaKnown RBP17.31■□□□□ 0.36
COL7A1-210ENST00000487017 AARSP49588 968 aaKnown RBP eCLIP17.31■□□□□ 0.36
COL7A1-210ENST00000487017 RABGAP1LQ5R372 815 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ERP27Q96DN0 273 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CCND1P24385 295 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 RPA1P27694 616 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 WDR72Q3MJ13 1102 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CNPY4Q8N129 248 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 RNF149Q8NC42 400 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ARMC2Q8NEN0 867 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 MCEEQ96PE7 176 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 PIM2Q9P1W9 311 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 MOSPD1Q9UJG1 213 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ANP32DO95626 131 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ACOT2P49753 483 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 XKR3Q5GH77 459 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 KDM7AQ6ZMT4 941 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CLEC10AQ8IUN9 316 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 RIBC1Q8N443 379 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-210ENST00000487017 BATF3Q9NR55 127 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ZC3H7BQ9UGR2 993 aaKnown RBP17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CAMTA2O94983 1202 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 ATICP31939 592 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 HSD17B3P37058 310 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 PRAMEP78395 509 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CENPCQ03188 943 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 IMPG1Q17R60 797 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 AGR3Q8TD06 166 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 OSBPL8Q9BZF1 889 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 JMJD4Q9H9V9 463 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 EML4Q9HC35 981 aaKnown RBP17.31■□□□□ 0.36
COL7A1-210ENST00000487017 PPRC1Q5VV67 1664 aaKnown RBP17.3■□□□□ 0.36
COL7A1-210ENST00000487017 SYNDIG1LA6NDD5 238 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 MAGEA4P43358 317 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 ITGA8P53708 1063 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 PGBD4Q96DM1 585 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 ATXN7L3BQ96GX2 97 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 SLC8A2Q9UPR5 921 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 CEMIPQ8WUJ3 1361 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 LCP1P13796 627 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 SNRPFP62306 86 aaKnown RBP17.3■□□□□ 0.36
COL7A1-210ENST00000487017 ZNF200P98182 395 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-210ENST00000487017 NCOA4Q13772 614 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 MDH1BQ5I0G3 518 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 ZNF560Q96MR9 790 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 ATP9BO43861 1147 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 PLEKP08567 350 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-210ENST00000487017 SERPINB9P50453 376 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 SESN2P58004 480 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-210ENST00000487017 STX3Q13277 289 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 CAPRIN1Q14444 709 aaKnown RBP17.3■□□□□ 0.36
COL7A1-210ENST00000487017 KYNUQ16719 465 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 LRRC8EQ6NSJ5 796 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 BARGINQ6ZT62 677 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 TEX2Q8IWB9 1127 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 TPCN2Q8NHX9 752 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 MAD2L2Q9UI95 211 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 POLIQ9UNA4 740 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 TTC30AQ86WT1 665 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 DTX3LQ8TDB6 740 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 CASKIN2Q8WXE0 1202 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 FAM129AQ9BZQ8 928 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 SP110Q9HB58 689 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 TMEM8AQ9HCN3 771 aa17.3■□□□□ 0.36
COL7A1-210ENST00000487017 KCNQ2O43526 872 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 APRTP07741 180 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 NFKBIAP25963 317 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 RXRBP28702 533 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 STAT5BP51692 787 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 RNF135Q8IUD6 432 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 SH2D3AQ9BRG2 576 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 PCDHB2Q9Y5E7 798 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 ELF1P32519 619 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 COILP38432 576 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-210ENST00000487017 SNX19Q92543 992 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 ULK4Q96C45 1275 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 GOLPH3Q9H4A6 298 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 RAB6BQ9NRW1 208 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 HADHAP40939 763 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 SYCP2LQ5T4T6 812 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 FBXO33Q7Z6M2 555 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 ZC3H13Q5T200 1668 aaKnown RBP17.29■□□□□ 0.36
COL7A1-210ENST00000487017 ATMINO43313 823 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-210ENST00000487017 SLC29A2Q14542 456 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 STILQ15468 1287 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 SGSM1Q2NKQ1 1148 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 PDCD6IPQ8WUM4 868 aaKnown RBP17.29■□□□□ 0.36
COL7A1-210ENST00000487017 MMP19Q99542 508 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 SLC40A1Q9NP59 571 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 EHD2Q9NZN4 543 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 PDGFRAP16234 1089 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 TROAPQ12815 778 aa17.29■□□□□ 0.36
COL7A1-210ENST00000487017 PTK7Q13308 1070 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms