RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SMC3Q9UQE7 1217 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 SIT1Q9Y3P8 196 aa7.74□□□□□ -1.17
VPS41-208ENST00000448833 PRRG1O14668 218 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 SLC16A4O15374 487 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 NCAM2O15394 837 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 N4BP1O75113 896 aaKnown RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 MICAL2O94851 1124 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 LRG1P02750 347 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CFHP08603 1231 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CLTAP09496 248 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 ATF2P15336 505 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 PDCP20941 246 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 PROZP22891 400 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 MATR3P43243 847 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS41-208ENST00000448833 MAGEA9P43362 315 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 PRKCQQ04759 706 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 HTR4Q13639 388 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 NOLC1Q14978 699 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS41-208ENST00000448833 ZRSR1Q15695 479 aaKnown RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 ECM1Q16610 540 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 PABPC1LQ4VXU2 614 aaKnown RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 SLC8B1Q6J4K2 584 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 ZC3H14Q6PJT7 736 aaKnown RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 MAMSTRQ6ZN01 415 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 BRAPQ7Z569 592 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CD302Q8IX05 232 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CCDC105Q8IYK2 499 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 DTWD2Q8NBA8 298 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 LEMD2Q8NC56 503 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 SLC7A14Q8TBB6 771 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 FGF13Q92913 245 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 KCNN1Q92952 543 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 NKD2Q969F2 451 aaPredicted RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 MYADMQ96S97 322 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 KIFC3Q9BVG8 833 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 TARS2Q9BW92 718 aaKnown RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 MFRPQ9BY79 579 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CDT1Q9H211 546 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 AVENQ9NQS1 362 aaPredicted RBP7.73□□□□□ -1.17
VPS41-208ENST00000448833 CNTN3Q9P232 1028 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CDY1Q9Y6F8 540 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 CFAP54Q96N23 3096 aa7.73□□□□□ -1.17
VPS41-208ENST00000448833 VWA3AA6NCI4 1184 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 PODXLO00592 558 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 CCL16O15467 120 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 ABLIM3O94929 683 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 KRT18P05783 430 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 PLA2G4BP0C869 781 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 MYBP10242 640 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 NPR3P17342 541 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 GJB2P29033 226 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 LONP1P36776 959 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 STARD6P59095 220 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 OSTNP61366 133 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 NBR1Q14596 966 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 ANGPT1Q15389 498 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 C8orf34Q49A92 452 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 GLRA4Q5JXX5 417 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 VARS2Q5ST30 1063 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 CYP4A22Q5TCH4 519 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 LARP1BQ659C4 914 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 IQCEQ6IPM2 695 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 TCEAL8Q8IYN2 117 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 DAW1Q8N136 415 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 TMEM161BQ8NDZ6 487 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 RASSF8Q8NHQ8 419 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 RSAD2Q8WXG1 361 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 BICD1Q96G01 975 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 TMX3Q96JJ7 454 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 SUSD3Q96L08 255 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 SNX27Q96L92 541 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 ZNF512Q96ME7 567 aaPredicted RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 MMTAG2Q9BU76 263 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 RUSC1Q9BVN2 902 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 OSBPL6Q9BZF3 934 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 GPR88Q9GZN0 384 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 SMOC2Q9H3U7 446 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 ARHGEF3Q9NR81 526 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 MRPS17Q9Y2R5 130 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 MRPS23Q9Y3D9 190 aaKnown RBP7.72□□□□□ -1.17
VPS41-208ENST00000448833 NUMBLQ9Y6R0 609 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 NOTCH4Q99466 2003 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 TCHHQ07283 1943 aa7.72□□□□□ -1.17
VPS41-208ENST00000448833 CACNA1HO95180 2353 aa7.71□□□□□ -1.17
VPS41-208ENST00000448833 FANCMQ8IYD8 2048 aa7.71□□□□□ -1.17
VPS41-208ENST00000448833 SFI1A8K8P3 1242 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 PP2D1A8MPX8 630 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 NARSO43776 548 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 ECI2O75521 394 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 EDN1P05305 212 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 MAPTP10636 758 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 CYP3A5P20815 502 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 TKTP29401 623 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 CDC25AP30304 524 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 MCM4P33991 863 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 LIG4P49917 911 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 SLC12A3P55017 1021 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 FOXK2Q01167 660 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 POU5F1Q01860 360 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 YWHAHQ04917 246 aaPredicted RBP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms